Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O15
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...    28   4.8  

>Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical
           protein R102.8 protein.
          Length = 209

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 114 NFIKNRNLYELYPNVWIALQILLIILVTVA 203
           NF  N + Y LY +V + ++ILLI+ +TVA
Sbjct: 30  NFF-NPSTYRLYIHVLLTMRILLILFITVA 58


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 87  NVVTPAYVLNFIKNRNLYELYPNVWIAL 170
           N++   + L F+KN  + E+YPN ++ L
Sbjct: 109 NILGGIHGLRFLKNHEIEEMYPNKYLPL 136


>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 87  NVVTPAYVLNFIKNRNLYELYPNVWIAL 170
           N++   + L F+KN  + E+YPN ++ L
Sbjct: 95  NILGGIHGLRFLKNHEIEEMYPNKYLPL 122


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 87  NVVTPAYVLNFIKNRNLYELYPNVWIAL 170
           N++   + L F+KN  + E+YPN ++ L
Sbjct: 98  NILGGIHGLRFLKNHEIEEMYPNKYLPL 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,417,355
Number of Sequences: 27780
Number of extensions: 182624
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)