Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O14
(570 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 59 5e-09
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 57 2e-08
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 56 3e-08
S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotei... 56 4e-08
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 54 1e-07
AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein ... 54 2e-07
AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed... 54 2e-07
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 52 4e-07
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 52 5e-07
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 51 1e-06
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 51 1e-06
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 49 5e-06
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 48 9e-06
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 47 2e-05
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 47 2e-05
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 46 3e-05
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 44 2e-04
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 44 2e-04
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 44 2e-04
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 44 2e-04
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 44 2e-04
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 44 2e-04
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 44 2e-04
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 44 2e-04
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 44 2e-04
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 42 6e-04
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 36 0.029
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 35 0.089
AY118582-1|AAM49951.1| 830|Drosophila melanogaster LD44094p pro... 33 0.21
AE014296-3602|AAN12187.1| 830|Drosophila melanogaster CG11248-P... 33 0.21
AE014296-3601|AAF51765.1| 830|Drosophila melanogaster CG11248-P... 33 0.21
AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p pro... 33 0.36
AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p pro... 30 1.9
AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p pro... 29 4.4
BT025194-1|ABF17885.1| 1171|Drosophila melanogaster FI01301p pro... 28 7.7
BT016154-1|AAV37039.1| 1171|Drosophila melanogaster AT13664p pro... 28 7.7
BT001342-1|AAN71097.1| 1171|Drosophila melanogaster AT22944p pro... 28 7.7
BT001279-1|AAN71035.1| 669|Drosophila melanogaster AT07759p pro... 28 7.7
AY069812-1|AAL39957.1| 937|Drosophila melanogaster SD05477p pro... 28 7.7
AY060669-1|AAL28217.1| 1045|Drosophila melanogaster GH09832p pro... 28 7.7
AE014298-1946|AAO41651.1| 913|Drosophila melanogaster CG32627-P... 28 7.7
AE014298-1945|AAN09334.1| 937|Drosophila melanogaster CG32627-P... 28 7.7
AE014298-1944|AAF48304.2| 1201|Drosophila melanogaster CG32627-P... 28 7.7
AE013599-3417|AAF46864.1| 1171|Drosophila melanogaster CG4329-PA... 28 7.7
AE013599-3416|AAM71107.1| 667|Drosophila melanogaster CG4329-PB... 28 7.7
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 58.8 bits (136), Expect = 5e-09
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AIY S K+F+Y + R F I TDH+PL + ++++ ++++ + +F DI I
Sbjct: 479 AIYWSTKFFKYYIYGRKFIIKTDHRPLVWLNNLKEPNLKLQRWKVQ--LNEFDFDITFIK 536
Query: 192 GKDNIIADTLSRIEQVS-QPVDLKILANLQETDPELQELLNGETSLKLT 335
GK+N +AD LSRI + S + D N++ + ++ L N T ++T
Sbjct: 537 GKENALADGLSRIVKASTEEYDKNAQTNIEINNLDIFMLENTNTLPEVT 585
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/73 (35%), Positives = 47/73 (64%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI + K FR+ + RHF I +DH+PLC+ + +++ +++ +A++ DI+++
Sbjct: 501 AIVWATKTFRHYLLGRHFEIASDHQPLCWLHKMKEPNAKLTRWKFR--LAEYDFDIKYVK 558
Query: 192 GKDNIIADTLSRI 230
GK+N +AD LSRI
Sbjct: 559 GKENHVADALSRI 571
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 429 VYESLHSLSHPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
+ +S L HPG T KL SE Y +P + + C C AK
Sbjct: 701 ILQSHEKLLHPGIQKTKKLFSENYFFPNSQLQIQNIINECQVCNLAK 747
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/74 (37%), Positives = 46/74 (62%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI + K FR+ + RHF I +DH+PL + Y ++ ++R +++F DI++I
Sbjct: 554 AIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVK--LSEFDFDIKYIK 611
Query: 192 GKDNIIADTLSRIE 233
GK+N +AD LSRI+
Sbjct: 612 GKENCVADALSRIK 625
>S68526-1|AAD14015.2| 624|Drosophila melanogaster pol polyprotein
protein.
Length = 624
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/73 (36%), Positives = 45/73 (61%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI+ ++ +FR V RHF + +DH+PL + + +R + R LD + +F ++++
Sbjct: 52 AIHWAINHFRPYVYGRHFLVQSDHRPLSYLFSMRNPSSKLTRMR-LD-LEEFEFTVEYLK 109
Query: 192 GKDNIIADTLSRI 230
GKDN +AD LSRI
Sbjct: 110 GKDNHVADALSRI 122
Score = 30.3 bits (65), Expect = 1.9
Identities = 31/136 (22%), Positives = 56/136 (41%)
Frame = +3
Query: 162 QFTTDIQHISGKDNIIADTLSRIEQVSQPVDLKILANLQETDPELQELLNGETSLKLTKI 341
QF + + ++II LS EQ+ + V +K N +E G LK KI
Sbjct: 216 QFFQRLNEEARINSIIQTQLSPSEQIFEFVTIK---NFKE---------KGNKILKNLKI 263
Query: 342 SIPGTNIKLYADETTNITRPYVPKVMRRRVYESLHSLSHPGANATAKLVSERYVWPCVRK 521
++ K+ ++ I K + + ++ H G + T + + WP + K
Sbjct: 264 ALLNKATKIDKNDKVQI------KAILSKYHDDPSEGGHSGISRTLRKMKNCCCWPRMTK 317
Query: 522 DCRKWTRTCYACQRAK 569
++ TC CQ++K
Sbjct: 318 AISEYVETCLKCQQSK 333
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/73 (34%), Positives = 45/73 (61%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI+ ++ +F+ + RHFT+ TDH+PL + + + + R LD + ++ ++++
Sbjct: 559 AIHWAINHFKPYIYGRHFTVKTDHRPLTYLFSMVNPSSKLTRMR-LD-LEEYEFTVEYLK 616
Query: 192 GKDNIIADTLSRI 230
GKDN +AD LSRI
Sbjct: 617 GKDNYVADALSRI 629
>AF541949-2|AAN34652.1| 826|Drosophila melanogaster pol protein
protein.
Length = 826
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/73 (34%), Positives = 45/73 (61%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI+ ++ +FR + +HFTI TDH+PL + + + + R L+ + ++ ++++
Sbjct: 254 AIHWAITHFRPYIYGKHFTIKTDHRPLTYLFSMTNPSSKLTRMR-LE-LEEYDFTVEYLR 311
Query: 192 GKDNIIADTLSRI 230
GKDN +AD LSRI
Sbjct: 312 GKDNFVADALSRI 324
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +3
Query: 432 YESLHSLSHPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
++ L H G T + Y W + + +++ R C+ CQ +K
Sbjct: 490 HDDLIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSK 535
>AF420242-1|AAL16060.1| 826|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 826
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/73 (34%), Positives = 45/73 (61%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI+ ++ +FR + +HFTI TDH+PL + + + + R L+ + ++ ++++
Sbjct: 254 AIHWAITHFRPYIYGKHFTIKTDHRPLTYLFSMTNPSSKLTRMR-LE-LEEYDFTVEYLR 311
Query: 192 GKDNIIADTLSRI 230
GKDN +AD LSRI
Sbjct: 312 GKDNFVADALSRI 324
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 456 HPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
H G T + Y W + + +++ R C+ CQ +K
Sbjct: 498 HTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSK 535
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 52.4 bits (120), Expect = 4e-07
Identities = 25/74 (33%), Positives = 47/74 (63%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI + K FR+ + RH I +DH+PLC+ + +++ +++ ++++ DI++I
Sbjct: 516 AIVWATKTFRHYLLGRHCEIASDHQPLCWLHKLKEPNSKLTRWKIR--LSEYDFDIKYIK 573
Query: 192 GKDNIIADTLSRIE 233
GK+N +AD LSRI+
Sbjct: 574 GKENHVADALSRIK 587
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 450 LSHPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
L HPG T KL SE Y +P + + C C AK
Sbjct: 724 LLHPGIQKTVKLFSENYYFPNSQLLIQNIINECQVCNLAK 763
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI+ ++ +FR + +HF + +DH+PL + + ++ + R LD + ++ ++++
Sbjct: 420 AIHWAINHFRPYIYGKHFMVKSDHRPLSYLFSMKNPSSKLTRMR-LD-LEEYDFTVEYLK 477
Query: 192 GKDNIIADTLSRI 230
GKDN IAD LSRI
Sbjct: 478 GKDNHIADALSRI 490
Score = 37.1 bits (82), Expect = 0.017
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 456 HPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
H G + T + Y WP + K K+ +TC CQ+AK
Sbjct: 667 HTGISRTQSKIKRFYYWPQMTKTISKYVKTCLKCQQAK 704
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI+ ++ +FR + +HFT+ TDH+PL + + + + R L+ + ++ ++++
Sbjct: 665 AIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIR-LE-LEEYNFTVEYLK 722
Query: 192 GKDNIIADTLSRI 230
GKDN +AD LSRI
Sbjct: 723 GKDNHVADALSRI 735
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 456 HPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
H G T V Y W + K +++ R C CQ+AK
Sbjct: 909 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAK 946
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI+ ++ +FR + +HFT+ TDH+PL + + + + R L+ + ++ ++++
Sbjct: 428 AIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIR-LE-LEEYNFTVEYLK 485
Query: 192 GKDNIIADTLSRI 230
GKDN +AD LSRI
Sbjct: 486 GKDNHVADALSRI 498
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 456 HPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
H G T V Y W + K +++ R C CQ+AK
Sbjct: 672 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAK 709
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1065
Score = 48.8 bits (111), Expect = 5e-06
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI + KYFR + R F I +DH+PL + I++ ++++ + +F I+++
Sbjct: 542 AIVWATKYFRSYLFGRKFEIHSDHRPLVWLDSIKEPNMKLQRWKIK--LNEFDYHIKYLP 599
Query: 192 GKDNIIADTLSRI---EQVSQPVDLKILANLQETDPELQELLNGETSLKLTKISIPGTNI 362
GK+N +AD LSR+ E I Q T QE SL I+ I
Sbjct: 600 GKENHVADALSRVKIEENFLGETSSNISLPTQATIHSAQEDNQSYISLTERPINYYNRQI 659
Query: 363 KLYADETTNI-TRPYVPK 413
+ D+ N+ T+ Y K
Sbjct: 660 EFIKDDNNNVETKRYFHK 677
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 429 VYESLHSLSHPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
+ +S L HPG L E+Y +P +K + C C +K
Sbjct: 754 IIKSHRELLHPGIEKQTNLFKEKYYYPDYQKLIQNIINECEVCNISK 800
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 48.0 bits (109), Expect = 9e-06
Identities = 26/74 (35%), Positives = 41/74 (55%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI ++KYFR + FTI TDHKPL + + ++ ++R + ++ +I H
Sbjct: 666 AIIWAVKYFRPYIYGVKFTIVTDHKPLIWLMNFKEPNSKIIRWRLQ--LMEYNFEIIHKK 723
Query: 192 GKDNIIADTLSRIE 233
G N+IAD LSR +
Sbjct: 724 GSQNVIADALSRAD 737
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 47.2 bits (107), Expect = 2e-05
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI +++YFR + R FTI TDHKPL + + ++ ++R + ++ ++ +
Sbjct: 553 AIIWAVQYFRPYLFGRRFTIITDHKPLTWLMNFKQPNSKIVRWRLQ--LQEYDFEVVYKK 610
Query: 192 GKDNIIADTLSRIE-QVSQPVDLKILANLQETDPELQELLNGETSLKLTKISIPGTN 359
G N+IAD LSR E V+ L I N+ P ++ LN L KI+ P TN
Sbjct: 611 GSQNVIADALSRPEASVNHNEALSIPQNV---CPISEKPLNDFNIQLLFKIT-PDTN 663
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/74 (32%), Positives = 45/74 (60%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI + K FR+ + R F I +DH+PL + +++++ ++R ++++ I +I
Sbjct: 553 AIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVR--LSEYQFKIDYIK 610
Query: 192 GKDNIIADTLSRIE 233
GK+N +AD LSRI+
Sbjct: 611 GKENSVADALSRIK 624
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
AI + KYFR + R F + +DHKPL + +I++ ++++ + +F I+++
Sbjct: 627 AIVWATKYFRSYLFGRPFEVLSDHKPLVWLNNIKEPNMKLQRWKIK--LNEFDYKIKYLP 684
Query: 192 GKDNIIADTLSR 227
GK+N +AD LSR
Sbjct: 685 GKENHVADALSR 696
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 450 LSHPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
L HPG T L E Y +P +K + C C AK
Sbjct: 841 LLHPGIEKTINLFKEEYYYPDSQKLIQTIINECQICYLAK 880
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 43.6 bits (98), Expect = 2e-04
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 23/211 (10%)
Frame = +3
Query: 6 TGAIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQH 185
T A+ +++K+FR+ + R F ++TD L + K +PR R ++ F +IQ+
Sbjct: 789 TLAVVKAVKHFRHYLIGREFVVYTDCNSLKASR--TKIDLTPRVHRWWAYLQSFNFEIQY 846
Query: 186 ISGKDNIIADTLSR----------IEQVSQP-VDLKILANL-----QETDPELQELLNGE 317
GK D LSR I ++ + V+L +++ Q D E+ E++N
Sbjct: 847 REGKRMAHVDFLSRNPLSPEHILSINKIPEKRVNLSEISSTWLLAEQRLDLEIIEIVNKL 906
Query: 318 TSLKLTKISIPGTNIK---LYAD-ETTNITR--PYVPKVMRRRVYESLH-SLSHPGANAT 476
S +L + +++ LY + T P VP+ + V +H S+ H G T
Sbjct: 907 ESDELAENLAKTYDLRKGVLYRKVQRRGRTSYLPVVPRAFKWSVINQVHESIMHLGWQKT 966
Query: 477 AKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
V + Y + + K RK+ C C+ K
Sbjct: 967 LDKVYQYYWFAKMNKYVRKFVSNCITCRSVK 997
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 30 KYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNII 209
K ++ +R IFTDH+PL FA R ++++ +I Q + + GK+N +
Sbjct: 527 KLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVFYKPGKENFV 584
Query: 210 ADTLSR 227
AD LSR
Sbjct: 585 ADALSR 590
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 30 KYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNII 209
K ++ +R IFTDH+PL FA R ++++ +I Q + + GK+N +
Sbjct: 522 KLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVFYKPGKENFV 579
Query: 210 ADTLSR 227
AD LSR
Sbjct: 580 ADALSR 585
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 30 KYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNII 209
K ++ +R IFTDH+PL FA R ++++ +I Q + + GK+N +
Sbjct: 557 KLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVFYKPGKENFV 614
Query: 210 ADTLSR 227
AD LSR
Sbjct: 615 ADALSR 620
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 30 KYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNII 209
K ++ +R IFTDH+PL FA R ++++ +I Q + + GK+N +
Sbjct: 557 KLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVFYKPGKENFV 614
Query: 210 ADTLSR 227
AD LSR
Sbjct: 615 ADALSR 620
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 30 KYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNII 209
K ++ +R IFTDH+PL FA R ++++ +I Q + + GK+N +
Sbjct: 522 KLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVFYKPGKENFV 579
Query: 210 ADTLSR 227
AD LSR
Sbjct: 580 ADALSR 585
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 30 KYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNII 209
K ++ +R IFTDH+PL FA R ++++ +I Q + + GK+N +
Sbjct: 522 KLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVFYKPGKENFV 579
Query: 210 ADTLSR 227
AD LSR
Sbjct: 580 ADALSR 585
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Frame = +3
Query: 12 AIYESLKYFR-YMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHI 188
AI SL R Y+ A ++TDH+PL FA R ++++ I ++ ++ +
Sbjct: 484 AIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKAR--IEEYNCELIYK 541
Query: 189 SGKDNIIADTLSRIEQVSQPVDLKILANLQETDPELQELLNGETSLKLTKISIP 350
GK N++AD LSRI + + AN ++ ++Q L ++L + IP
Sbjct: 542 PGKSNVVADALSRIPPQLNQLSTDLDANPED---DMQSLATAHSALHDSSRLIP 592
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 30 KYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNII 209
K ++ +R IFTDH+PL FA R ++++ +I Q + + GK+N +
Sbjct: 975 KLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWK--SYIDQHNAKVFYKPGKENFV 1032
Query: 210 ADTLSR 227
AD LSR
Sbjct: 1033 ADALSR 1038
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 12 AIYESLKYFR-YMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHI 188
AI +LK R Y+ ++ IFTDH+PL +A R ++++ FI + I +
Sbjct: 546 AIVWALKSLRNYLYGVKNLNIFTDHQPLTYAVSDRNPNAKIKRWK--AFIDEHNAKIFYK 603
Query: 189 SGKDNIIADTLSR 227
GK+ +AD LSR
Sbjct: 604 PGKETYVADALSR 616
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1013
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +3
Query: 15 IYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISG 194
++ K Y+ + IFTDH+PL FA + + + + R I + I + G
Sbjct: 519 VWALAKLRHYLYAVKEINIFTDHQPLTFA--VSESNPNAKIKRWKARIDESGARIFYKPG 576
Query: 195 KDNIIADTLSR 227
++N++AD LSR
Sbjct: 577 RNNLVADALSR 587
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 34.7 bits (76), Expect = 0.089
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 12 AIYESLKYFR-YMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHI 188
AI +LK + Y+ IFTDH+PL + + + R R ++ ++ +I +
Sbjct: 553 AIIWALKKLKIYLYGKAKVKIFTDHQPL--THSLSSWNGNARIKRWKAYLEEYDYEIFYK 610
Query: 189 SGKDNIIADTLSRIEQVSQ 245
G++N +AD LSR V Q
Sbjct: 611 PGRENTVADALSRGPTVEQ 629
>AY118582-1|AAM49951.1| 830|Drosophila melanogaster LD44094p
protein.
Length = 830
Score = 33.5 bits (73), Expect = 0.21
Identities = 31/125 (24%), Positives = 51/125 (40%)
Frame = +3
Query: 168 TTDIQHISGKDNIIADTLSRIEQVSQPVDLKILANLQETDPELQELLNGETSLKLTKISI 347
T +++H++ D L +++++SQ D + LQ QE L ++ + +
Sbjct: 558 TVELEHLNELFAGQNDELQKLQKLSQAQDEENRLELQLLKKTFQENLKINSAASINMQRL 617
Query: 348 PGTNIKLYADETTNITRPYVPKVMRRRVYESLHSLSHPGANATAKLVSERYVWPCVRKDC 527
G +K DE I R R+ E L SL H T + + WP + K
Sbjct: 618 QG-QVKSLLDEKEEIARE------ERKAVECLRSLGHVLEMETGRRLPHIKSWPQLAKIL 670
Query: 528 RKWTR 542
RK R
Sbjct: 671 RKELR 675
>AE014296-3602|AAN12187.1| 830|Drosophila melanogaster CG11248-PB,
isoform B protein.
Length = 830
Score = 33.5 bits (73), Expect = 0.21
Identities = 31/125 (24%), Positives = 51/125 (40%)
Frame = +3
Query: 168 TTDIQHISGKDNIIADTLSRIEQVSQPVDLKILANLQETDPELQELLNGETSLKLTKISI 347
T +++H++ D L +++++SQ D + LQ QE L ++ + +
Sbjct: 558 TVELEHLNELFAGQNDELQKLQKLSQAQDEENRLELQLLKKTFQENLKINSAASINMQRL 617
Query: 348 PGTNIKLYADETTNITRPYVPKVMRRRVYESLHSLSHPGANATAKLVSERYVWPCVRKDC 527
G +K DE I R R+ E L SL H T + + WP + K
Sbjct: 618 QG-QVKSLLDEKEEIARE------ERKAVECLRSLGHVLEMETGRRLPHIKSWPQLAKIL 670
Query: 528 RKWTR 542
RK R
Sbjct: 671 RKELR 675
>AE014296-3601|AAF51765.1| 830|Drosophila melanogaster CG11248-PA,
isoform A protein.
Length = 830
Score = 33.5 bits (73), Expect = 0.21
Identities = 31/125 (24%), Positives = 51/125 (40%)
Frame = +3
Query: 168 TTDIQHISGKDNIIADTLSRIEQVSQPVDLKILANLQETDPELQELLNGETSLKLTKISI 347
T +++H++ D L +++++SQ D + LQ QE L ++ + +
Sbjct: 558 TVELEHLNELFAGQNDELQKLQKLSQAQDEENRLELQLLKKTFQENLKINSAASINMQRL 617
Query: 348 PGTNIKLYADETTNITRPYVPKVMRRRVYESLHSLSHPGANATAKLVSERYVWPCVRKDC 527
G +K DE I R R+ E L SL H T + + WP + K
Sbjct: 618 QG-QVKSLLDEKEEIARE------ERKAVECLRSLGHVLEMETGRRLPHIKSWPQLAKIL 670
Query: 528 RKWTR 542
RK R
Sbjct: 671 RKELR 675
>AY095181-1|AAM12274.1| 320|Drosophila melanogaster GM07634p
protein.
Length = 320
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 456 HPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
H G T V Y W + K +++ R C CQ+AK
Sbjct: 60 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAK 97
>AY089684-1|AAL90422.1| 370|Drosophila melanogaster RH61266p
protein.
Length = 370
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 456 HPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQRAK 569
H G T + Y W + + +++ R C+ CQ +K
Sbjct: 42 HTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSK 79
>AY089271-1|AAL90009.1| 451|Drosophila melanogaster AT07338p
protein.
Length = 451
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 495 RYVWPCVRKDCRKWTRTCYACQRAK 569
RY WP + + RK+ R C C K
Sbjct: 119 RYYWPGMHRGVRKYVRNCECCMMYK 143
>BT025194-1|ABF17885.1| 1171|Drosophila melanogaster FI01301p
protein.
Length = 1171
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 81 HKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNIIADTLSRIEQVSQPVDLK 260
H+ C A K+ + + RH + + T I I + I DTL+ ++ +
Sbjct: 736 HRSYCSALEELKELNNEIEARHTEEMNHITFQINSIREEHRIQLDTLATQYSERMLIEYQ 795
Query: 261 ILANLQETDPELQE 302
NL+E EL+E
Sbjct: 796 KFTNLRENMLELRE 809
>BT016154-1|AAV37039.1| 1171|Drosophila melanogaster AT13664p
protein.
Length = 1171
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 81 HKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNIIADTLSRIEQVSQPVDLK 260
H+ C A K+ + + RH + + T I I + I DTL+ ++ +
Sbjct: 736 HRSYCSALEELKELNNEIEARHTEEMNHITFQINSIREEHRIQLDTLATQYSERMLIEYQ 795
Query: 261 ILANLQETDPELQE 302
NL+E EL+E
Sbjct: 796 KFTNLRENMLELRE 809
>BT001342-1|AAN71097.1| 1171|Drosophila melanogaster AT22944p
protein.
Length = 1171
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 81 HKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNIIADTLSRIEQVSQPVDLK 260
H+ C A K+ + + RH + + T I I + I DTL+ ++ +
Sbjct: 736 HRSYCSALEELKELNNEIEARHTEEMNHITFQINSIREEHRIQLDTLATQYSERMLIEYQ 795
Query: 261 ILANLQETDPELQE 302
NL+E EL+E
Sbjct: 796 KFTNLRENMLELRE 809
>BT001279-1|AAN71035.1| 669|Drosophila melanogaster AT07759p
protein.
Length = 669
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 81 HKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNIIADTLSRIEQVSQPVDLK 260
H+ C A K+ + + RH + + T I I + I DTL+ ++ +
Sbjct: 234 HRSYCSALEELKELNNEIEARHTEEMNHITFQINSIREEHRIQLDTLATQYSERMLIEYQ 293
Query: 261 ILANLQETDPELQE 302
NL+E EL+E
Sbjct: 294 KFTNLRENMLELRE 307
>AY069812-1|AAL39957.1| 937|Drosophila melanogaster SD05477p
protein.
Length = 937
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 1 AARGQFTNL*NILDIWWKQDTSLYSPTTSRYVL 99
A+R + + + +D WK +TS Y P + RYVL
Sbjct: 382 ASRSEASKDASDIDDIWKNNTSEYKPASPRYVL 414
>AY060669-1|AAL28217.1| 1045|Drosophila melanogaster GH09832p
protein.
Length = 1045
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 81 HKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNIIADTLSRIEQVSQPVDLK 260
H+ C A K+ + + RH + + T I I + I DTL+ ++ +
Sbjct: 610 HRSYCSALEELKELNNEIEARHTEEMNHITFQINSIREEHRIQLDTLATQYSERMLIEYQ 669
Query: 261 ILANLQETDPELQE 302
NL+E EL+E
Sbjct: 670 KFTNLRENMLELRE 683
>AE014298-1946|AAO41651.1| 913|Drosophila melanogaster CG32627-PC,
isoform C protein.
Length = 913
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 1 AARGQFTNL*NILDIWWKQDTSLYSPTTSRYVL 99
A+R + + + +D WK +TS Y P + RYVL
Sbjct: 94 ASRSEASKDASDIDDIWKNNTSEYKPASPRYVL 126
>AE014298-1945|AAN09334.1| 937|Drosophila melanogaster CG32627-PB,
isoform B protein.
Length = 937
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 1 AARGQFTNL*NILDIWWKQDTSLYSPTTSRYVL 99
A+R + + + +D WK +TS Y P + RYVL
Sbjct: 382 ASRSEASKDASDIDDIWKNNTSEYKPASPRYVL 414
>AE014298-1944|AAF48304.2| 1201|Drosophila melanogaster CG32627-PA,
isoform A protein.
Length = 1201
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 1 AARGQFTNL*NILDIWWKQDTSLYSPTTSRYVL 99
A+R + + + +D WK +TS Y P + RYVL
Sbjct: 382 ASRSEASKDASDIDDIWKNNTSEYKPASPRYVL 414
>AE013599-3417|AAF46864.1| 1171|Drosophila melanogaster CG4329-PA,
isoform A protein.
Length = 1171
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 81 HKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNIIADTLSRIEQVSQPVDLK 260
H+ C A K+ + + RH + + T I I + I DTL+ ++ +
Sbjct: 736 HRSYCSALEELKELNNEIEARHTEEMNHITFQINSIREEHRIQLDTLATQYSERMLIEYQ 795
Query: 261 ILANLQETDPELQE 302
NL+E EL+E
Sbjct: 796 KFTNLRENMLELRE 809
>AE013599-3416|AAM71107.1| 667|Drosophila melanogaster CG4329-PB,
isoform B protein.
Length = 667
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +3
Query: 81 HKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHISGKDNIIADTLSRIEQVSQPVDLK 260
H+ C A K+ + + RH + + T I I + I DTL+ ++ +
Sbjct: 232 HRSYCSALEELKELNNEIEARHTEEMNHITFQINSIREEHRIQLDTLATQYSERMLIEYQ 291
Query: 261 ILANLQETDPELQE 302
NL+E EL+E
Sbjct: 292 KFTNLRENMLELRE 305
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,458,352
Number of Sequences: 53049
Number of extensions: 496948
Number of successful extensions: 1343
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -