Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O14
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 44 1e-04
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 44 1e-04
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 44 1e-04
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 29 2.4
Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 29 2.4
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 29 2.4
AJ745072-1|CAG32978.1| 400|Caenorhabditis elegans alpha1,3-fuco... 29 3.1
AF003386-15|AAB54261.2| 400|Caenorhabditis elegans Fucosyl tran... 29 3.1
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 28 4.1
AC006627-9|AAK85464.1| 367|Caenorhabditis elegans Hypothetical ... 28 4.1
U97193-6|AAV34803.1| 780|Caenorhabditis elegans Hypothetical pr... 27 7.2
U97193-5|AAV34804.1| 783|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z54269-4|CAA91021.1| 310|Caenorhabditis elegans Hypothetical pr... 27 9.5
U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydr... 27 9.5
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
A+ +L+ F+ ++ T+FTDHKPL ++ + R +R I +F I +++
Sbjct: 1380 AMMFALRRFKTIIYGTAITVFTDHKPLISL--LKGSPLADRLWRWSIEILEFDVKIVYLA 1437
Query: 192 GKDNIIADTLSR 227
GK N +AD LSR
Sbjct: 1438 GKANAVADALSR 1449
Score = 31.9 bits (69), Expect = 0.33
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +3
Query: 315 ETSLKLTKISIPGTNIKLYADETTNITRPYVPKVMRRRVYESLHS---LSHPGANATAKL 485
E+ + L I G +K E +R VP+ +R + + LH H G ++
Sbjct: 1518 ESEISLEYYKIVGGVLK--NTEIEEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRM 1575
Query: 486 VSERYVWPCVRKDCRKWTRTCYAC 557
V ++ WP +R RTC C
Sbjct: 1576 VHRKFYWPQMRVCVENCVRTCAKC 1599
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
A+ +L+ F+ ++ T+FTDHKPL ++ + R +R I +F I +++
Sbjct: 1283 AMMFALRRFKTIIYGTAITVFTDHKPLISL--LKGSPLADRLWRWSIEILEFDVKIVYLA 1340
Query: 192 GKDNIIADTLSR 227
GK N +AD LSR
Sbjct: 1341 GKANAVADALSR 1352
Score = 31.9 bits (69), Expect = 0.33
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +3
Query: 315 ETSLKLTKISIPGTNIKLYADETTNITRPYVPKVMRRRVYESLHS---LSHPGANATAKL 485
E+ + L I G +K E +R VP+ +R + + LH H G ++
Sbjct: 1421 ESEISLEYYKIVGGVLK--NTEIEEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRM 1478
Query: 486 VSERYVWPCVRKDCRKWTRTCYAC 557
V ++ WP +R RTC C
Sbjct: 1479 VHRKFYWPQMRVCVENCVRTCAKC 1502
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +3
Query: 12 AIYESLKYFRYMVEARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDIQHIS 191
A+ +L+ F+ ++ T+FTDHKPL ++ + R +R I +F I +++
Sbjct: 1294 AMMFALRRFKTIIYGTAITVFTDHKPLISL--LKGSPLADRLWRWSIEILEFDVKIVYLA 1351
Query: 192 GKDNIIADTLSR 227
GK N +AD LSR
Sbjct: 1352 GKANAVADALSR 1363
Score = 31.9 bits (69), Expect = 0.33
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +3
Query: 315 ETSLKLTKISIPGTNIKLYADETTNITRPYVPKVMRRRVYESLHS---LSHPGANATAKL 485
E+ + L I G +K E +R VP+ +R + + LH H G ++
Sbjct: 1432 ESEISLEYYKIVGGVLK--NTEIEEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRM 1489
Query: 486 VSERYVWPCVRKDCRKWTRTCYAC 557
V ++ WP +R RTC C
Sbjct: 1490 VHRKFYWPQMRVCVENCVRTCAKC 1513
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 163 WAMKSRCLNCRGEHLSLRIWYAKHSG 86
W +KSR N R H L Y KHSG
Sbjct: 107 WLVKSRGFNKRSPHWQLSNVYVKHSG 132
>Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical
protein F38E11.4 protein.
Length = 751
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +3
Query: 120 KCSPRQFRHLDFIAQFTTDIQHISGKDNIIADTLSRIEQVSQPVDLKILANLQETDPEL- 296
+CS + ++D Q + Q + ++A+ +++ P D K + ET PEL
Sbjct: 349 RCSSATYFYMDDECQLSDISQFSRPNEFVVANFTDYFDKICDPADPKPMLTTPETPPELI 408
Query: 297 QELLNGETSLKLTKISIPGTNIKLYADETT 386
Q ++ E + I+ N ++ T+
Sbjct: 409 QNSVDEEETTSERSIAQGAANFEVATTGTS 438
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 163 WAMKSRCLNCRGEHLSLRIWYAKHSG 86
W +KSR N R H L Y KHSG
Sbjct: 107 WLVKSRGFNKRSPHWQLSNVYVKHSG 132
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 163 WAMKSRCLNCRGEHLSLRIWYAKHSG 86
W +KSR N R H L Y KHSG
Sbjct: 107 WLVKSRGFNKRSPHWQLSNVYVKHSG 132
>AJ745072-1|CAG32978.1| 400|Caenorhabditis elegans
alpha1,3-fucosyltransferase homologueprotein.
Length = 400
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 339 ISIPGTNIKLYADET--TNITRPYVPKVMRRRVYESL 443
I+I T Y E + IT P +P VMRRRVY+++
Sbjct: 260 IAIENTVCNDYVTEKIWSRITVPSIPIVMRRRVYQNI 296
>AF003386-15|AAB54261.2| 400|Caenorhabditis elegans Fucosyl
transferase protein 3 protein.
Length = 400
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 339 ISIPGTNIKLYADET--TNITRPYVPKVMRRRVYESL 443
I+I T Y E + IT P +P VMRRRVY+++
Sbjct: 260 IAIENTVCNDYVTEKIWSRITVPSIPIVMRRRVYQNI 296
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +3
Query: 444 HSLSHPGANATAKLVSERYVWPCVRKDCRKWTRTCYACQR 563
H H T + E+ PC+R+ +K C CQR
Sbjct: 839 HGKYHTNEQQTMEATREKAWIPCLRRQVKKIIGKCVKCQR 878
>AC006627-9|AAK85464.1| 367|Caenorhabditis elegans Hypothetical
protein E01A2.7 protein.
Length = 367
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +3
Query: 9 GAIYESLKYFRYMVE---ARHFTIFTDHKPLCFAYHIRKDKCSPRQFRHLDFIAQFTTDI 179
G +Y + K ++++E A + D K L F HI ++ + D Q ++I
Sbjct: 202 GLVYYNGKKSQFLMENNIANGIILSRDQKTL-FVSHINQETIGVYTWNQKDGEIQKISEI 260
Query: 180 QHISGKDNIIADTLSRIEQVSQPV 251
+ ++G DN DT + PV
Sbjct: 261 ETLTGCDNFYVDTQDHLWAGCHPV 284
>U97193-6|AAV34803.1| 780|Caenorhabditis elegans Hypothetical
protein C06A5.3a protein.
Length = 780
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 495 RYVWPCVRKDCRKW 536
R+ W CV K CRKW
Sbjct: 516 RHRWRCVDKKCRKW 529
>U97193-5|AAV34804.1| 783|Caenorhabditis elegans Hypothetical
protein C06A5.3b protein.
Length = 783
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 495 RYVWPCVRKDCRKW 536
R+ W CV K CRKW
Sbjct: 519 RHRWRCVDKKCRKW 532
>Z54269-4|CAA91021.1| 310|Caenorhabditis elegans Hypothetical
protein F02C12.4 protein.
Length = 310
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 159 AQFTTDIQHIS---GKDNIIADTLSRIEQVSQPVDLKILANLQETDPELQELLNGETSLK 329
A TT +Q++ G+ I + TLS + + P+ K+ A+ L +N +++
Sbjct: 199 ANITTKLQYVKEVYGRVYIRSTTLSNL---TIPLLEKVYASEPTASTTLDPTINVASNMN 255
Query: 330 LTKISIPGTN 359
TK+S+P N
Sbjct: 256 FTKLSVPKIN 265
>U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydrase
protein 3 protein.
Length = 246
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 46 WWKQDTSLYSPTTSRYVLHTIFAK-ISVRHDNSDI 147
+W+ + SL +P S V TIF + ++V HD ++
Sbjct: 179 FWRYEGSLTTPPCSEIVTWTIFTEPVTVTHDQLEL 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,232,154
Number of Sequences: 27780
Number of extensions: 265323
Number of successful extensions: 754
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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