Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O14
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.8  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.7  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +1

Query: 49  WKQDTSLYSPTTSRYVLHTIFAKISVRHDNSDISIS 156
           W+ DT LY+    +Y    I   + V H    + +S
Sbjct: 88  WRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLS 123


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 555 KHNKFLSICGNLYVRMAIHNVQTQV 481
           K  ++LS+C  L + +++   +TQV
Sbjct: 28  KTTRYLSVCERLNLALSLSLTETQV 52


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 260 NLGKSTRNRSRITRTAQW*NITETYKNFDSWY*Y 361
           NL  STR +S     A     TE +K+   W+ Y
Sbjct: 469 NLEISTRPKSNTVENACVLKNTEIFKDKSDWFDY 502


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 312 GETSLKLTKISIPGTNIKLYADE 380
           G+T+L + K ++PG  I+   D+
Sbjct: 23  GKTNLAMMKPTLPGYKIECVGDD 45


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 543 FLSICGNLYVRMAIH 499
           FLS+ GN+ V +AI+
Sbjct: 37  FLSVAGNILVCVAIY 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,016
Number of Sequences: 438
Number of extensions: 3428
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)