Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O13
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   131   8e-32
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   130   2e-31
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    27   2.5  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.3  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   4.4  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   4.4  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    25   7.7  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  131 bits (316), Expect = 8e-32
 Identities = 62/131 (47%), Positives = 83/131 (63%)
 Frame = +2

Query: 59  MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 238
           M  V+VKDV+  K +   AA LK+ GK+  P  +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 239 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQEWL 418
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +Q+LE + ++EK     
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 419 ARIPSPPRADV 451
            RI    + D+
Sbjct: 121 RRISQQGQRDL 131


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  130 bits (313), Expect = 2e-31
 Identities = 61/131 (46%), Positives = 83/131 (63%)
 Frame = +2

Query: 59  MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 238
           M  V+VKDV+  + +   AA LK+ GK+  P  +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 239 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQEWL 418
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +Q+LE + ++EK     
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 419 ARIPSPPRADV 451
            RI    + D+
Sbjct: 121 RRISQQGQRDL 131


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 314 GVTPSHFCRSSGSIARKALQALEALKLVEKVQEWLARIPSPP 439
           G+T      S G I  +A    +A+ ++ +++ W  R P+PP
Sbjct: 42  GITVEELVESYGKIGFQATNLHDAVTIINEMRNW--RDPNPP 81


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 311 NGVTPSHFCRSSGSIARKAL-QALEALKLVEKVQEWLARIPSPPRADVTSTELL 469
           N ++P H+C  S   + +A  Q +  + +++  +E +  I +P  A   + +LL
Sbjct: 169 NNLSPDHYCEKSAESSLEATRQLISYMSILDPKREMVTPIITPRFAPSCTEDLL 222


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 281 QS*LQQESGYRCDAV*QHSVHKTNQGHR 198
           QS  +++SGY  D V   S H+T + HR
Sbjct: 90  QSFQREDSGYNDDVVTNSSSHRTPRHHR 117


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 461 LSRSRLPWVVREYGPAILEPSLPTSTLQELGELYEQ 354
           LS SRL  + + + P I EPSL   T   + E  E+
Sbjct: 502 LSYSRLSELSKTFSPEIREPSLTKKTAVSMQESKEE 537


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 62  RSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDH 157
           +S T+K         T A+  KKI  + +PDH
Sbjct: 121 QSFTIKSSTTYHTTPTTASENKKIESITIPDH 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,810
Number of Sequences: 5004
Number of extensions: 40958
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)