Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O13
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   140   7e-34
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897           29   1.9  
08_01_0428 + 3764322-3764852,3765005-3765284,3765965-3766059           28   5.9  
11_01_0645 + 5185341-5185568,5185773-5185823                           27   7.8  
06_01_1121 + 9232333-9232857,9233383-9234174                           27   7.8  
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157...    27   7.8  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  140 bits (339), Expect = 7e-34
 Identities = 64/127 (50%), Positives = 89/127 (70%)
 Frame = +2

Query: 71  TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 250
           TVKDV   + VK  +AHLK+ GK+++P+ +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 251 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQEWLARIP 430
           Y+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++   +    I 
Sbjct: 68  YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLIT 127

Query: 431 SPPRADV 451
           S  R D+
Sbjct: 128 SQGRRDL 134


>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
          Length = 922

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -3

Query: 467 AILSRSRLPWVVREYGPAILEPSLPTSTL 381
           AIL  + L W++  +GP ILE +L TSTL
Sbjct: 231 AILVGNSLYWLLSVWGPHILEFNLETSTL 259


>08_01_0428 + 3764322-3764852,3765005-3765284,3765965-3766059
          Length = 301

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 446 LPWVVREYGPAILEPSLPTSTLQELGELYEQYC 348
           L W VR   P+   P LP +T  +L EL+ + C
Sbjct: 156 LRWEVRPVLPSPGRPELPIATEADLAELFVKIC 188


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 248 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 364
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>06_01_1121 + 9232333-9232857,9233383-9234174
          Length = 438

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 518 TITCCLACCLAFRRTCAAILSRSRLPWVVREYGPAILEPSLPTS 387
           ++T  LA  +    T +   SRSR P  +R Y P ++  SLP++
Sbjct: 13  SLTAALAVAVVVLLTAS---SRSRRPSFLRRYEPTVVATSLPSA 53


>04_04_0411 -
           25014511-25015015,25015098-25015169,25015700-25015734,
           25015805-25015873,25015993-25016044,25016444-25016526,
           25016625-25016726,25017150-25017884,25017962-25018012,
           25018792-25018983,25019066-25019216,25020012-25020193,
           25020329-25020532,25020752-25020859
          Length = 846

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 380 EALKLVEKVQEWLARI-PSPPRA 445
           E L+L+E+ + WLAR+  SPP +
Sbjct: 30  ELLRLIEEAETWLARVDQSPPES 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,257
Number of Sequences: 37544
Number of extensions: 271085
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)