Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O13
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 135 2e-32
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 135 2e-32
AF038605-5|AAB92019.1| 211|Caenorhabditis elegans Hypothetical ... 31 0.76
Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical pr... 29 3.1
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 28 4.0
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 28 4.0
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 28 4.0
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 28 4.0
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 28 4.0
Z71258-13|CAN86573.1| 582|Caenorhabditis elegans Hypothetical p... 28 5.3
Z71258-6|CAA95779.1| 636|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 135 bits (326), Expect = 2e-32
Identities = 65/126 (51%), Positives = 85/126 (67%)
Frame = +2
Query: 56 MMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAA 235
M R+ ++KDV+Q + K++A LKK GKVKVP+ DLVK KELAP DPDWFY R A+
Sbjct: 1 MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAAS 60
Query: 236 ILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQEW 415
+ RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK +
Sbjct: 61 LARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDG 119
Query: 416 LARIPS 433
RI S
Sbjct: 120 KGRILS 125
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 135 bits (326), Expect = 2e-32
Identities = 65/126 (51%), Positives = 85/126 (67%)
Frame = +2
Query: 56 MMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAA 235
M R+ ++KDV+Q + K++A LKK GKVKVP+ DLVK KELAP DPDWFY R A+
Sbjct: 1 MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAAS 60
Query: 236 ILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQEW 415
+ RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK +
Sbjct: 61 LARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDG 119
Query: 416 LARIPS 433
RI S
Sbjct: 120 KGRILS 125
>AF038605-5|AAB92019.1| 211|Caenorhabditis elegans Hypothetical
protein C02B10.4 protein.
Length = 211
Score = 30.7 bits (66), Expect = 0.76
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -3
Query: 533 ESNYRTITCCLACCLAFRRTCAAILSRSRLPWVVREY--GPA--ILEPSLPTSTLQELGE 366
++N+ T A LA R A + P VVRE GP+ I++ T T ++L E
Sbjct: 52 QTNFVTKAGAAAAGLATRNISTASIRGRTAPAVVREIHTGPSTLIIKNLATTVTQEDLEE 111
Query: 365 LYEQY 351
L+EQY
Sbjct: 112 LFEQY 116
>Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical
protein T05F1.5 protein.
Length = 366
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 233 QHSVHKTNQGHREPVP*N--ELSLPSPYDLEPSLCRSFSSER 114
QH+ NQGHR P P + +LS P P + SL S R
Sbjct: 82 QHNRVGNNQGHRSPSPTSSPQLSSPPPSTMVDSLSTHSESSR 123
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/39 (20%), Positives = 22/39 (56%)
Frame = -3
Query: 467 AILSRSRLPWVVREYGPAILEPSLPTSTLQELGELYEQY 351
+++++ + W+ + YGP I + ++ L+ + YE +
Sbjct: 785 SVVAKESIMWLAKRYGPVICAKFISSNVLRIMASCYEAF 823
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/39 (20%), Positives = 22/39 (56%)
Frame = -3
Query: 467 AILSRSRLPWVVREYGPAILEPSLPTSTLQELGELYEQY 351
+++++ + W+ + YGP I + ++ L+ + YE +
Sbjct: 785 SVVAKESIMWLAKRYGPVICAKFISSNVLRIMASCYEAF 823
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 103 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 192
+NCS + E+DR S G SYG + F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 103 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 192
+NCS + E+DR S G SYG + F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 383 ALKLVEKVQEWLARIPSPPR 442
A+KL + QE+LA+IPS PR
Sbjct: 277 AIKLPDMYQEYLAKIPSNPR 296
>Z71258-13|CAN86573.1| 582|Caenorhabditis elegans Hypothetical
protein C01H6.7b protein.
Length = 582
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +2
Query: 296 GGRK--RNGVTPSHFCRSSGSIARKALQALEALKLVE-KVQEWLARIPSPP 439
GGRK R +T H + +ARKA + E K VE +VQE + + P+PP
Sbjct: 89 GGRKKKRAPLTDYHL-KKKKILARKAARDAEKEKEVEPEVQEEVPKEPTPP 138
>Z71258-6|CAA95779.1| 636|Caenorhabditis elegans Hypothetical
protein C01H6.7 protein.
Length = 636
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +2
Query: 296 GGRK--RNGVTPSHFCRSSGSIARKALQALEALKLVE-KVQEWLARIPSPP 439
GGRK R +T H + +ARKA + E K VE +VQE + + P+PP
Sbjct: 89 GGRKKKRAPLTDYHL-KKKKILARKAARDAEKEKEVEPEVQEEVPKEPTPP 138
>Z70205-4|CAA94115.2| 528|Caenorhabditis elegans Hypothetical
protein C11H1.5 protein.
Length = 528
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -3
Query: 497 CCLAFRRTCAAILSRSRLPWVVREYGPAILEP-SLPT-STLQELGEL---YEQYCQMICR 333
CC + TC+ + + R G ++ P P S+++E+ EL +EQ CQ +C
Sbjct: 451 CCKIIKNTCSDGIDPKFVKRWYRPRGSSVCVPYHYPRCSSMEEMEELPILFEQNCQDLCF 510
Query: 332 SE 327
S+
Sbjct: 511 SQ 512
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,758,493
Number of Sequences: 27780
Number of extensions: 237009
Number of successful extensions: 716
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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