Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O12
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   4.1  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   9.4  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   9.4  

>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 68  EKFDQWSTIQGQGILLPLAPNKKK*GRMTEQWRVKRKR 181
           E  D W++ +G   LL L P+K     + ++W V  +R
Sbjct: 253 EDQDPWASKEGAENLLKLLPDKDLASALRKKWEVDPER 290


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 377 SSDDAVQDGKHTKPRGTGSQVIL--PEHTYW 291
           SSD+AV D K   P G  +Q ++  P+  Y+
Sbjct: 87  SSDNAVTDRKTISPSGINNQYVIRNPKDVYY 117


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
 Frame = +2

Query: 242 RTWVATTLKF------ENLSLITSRCVPAVSLENQYL 334
           RT+V T + F      ENLSLI S   P++S ++ +L
Sbjct: 570 RTYVKTPIPFSKFSSSENLSLIPSLLPPSISWDDVFL 606


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 520 RLDCVVFHYTYTSMFRNSLRLNFIY*YFLLHNINCKIKK 404
           ++DCV  + T     +  L+ NF+     +H ++CK K+
Sbjct: 364 KVDCVSDYTTMFKPIKAYLQKNFLIPENRIHAVSCKTKE 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,516
Number of Sequences: 5004
Number of extensions: 42624
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)