Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O12
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035...    30   1.0  
11_01_0745 - 6281242-6281307,6281556-6281741,6281828-6281949,628...    29   2.4  
04_04_0754 + 27803143-27803517,27805441-27806832,27806910-278071...    29   3.1  
12_02_0450 + 19172812-19172920,19173020-19173088,19173168-191732...    28   5.4  
07_03_0845 - 21979581-21981281                                         27   9.5  

>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
            18503693-18503743,18503868-18503960,18504125-18504220,
            18504318-18504368,18504452-18504570,18504909-18505017,
            18505391-18505513,18505590-18505661,18505963-18506034,
            18506125-18506191,18506260-18506402,18506494-18506565,
            18506632-18506760,18507317-18507472,18507579-18507692,
            18507791-18507889,18507974-18508051,18508402-18508536,
            18509081-18509155,18509247-18509361,18509458-18509828,
            18509903-18509965,18510049-18510120,18510285-18510413,
            18510512-18510628,18510902-18511018
          Length = 1289

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1

Query: 125  GQGVVKSLAPGLLTTGQTSPERSGLRGVGHSPPIPIGP 12
            GQGV++  + G   T   + +RSG RG GHS  +P GP
Sbjct: 974  GQGVMQGASFGAAGTNPVADKRSG-RGKGHS-FVPFGP 1009


>11_01_0745 -
           6281242-6281307,6281556-6281741,6281828-6281949,
           6284169-6284532
          Length = 245

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 138 FFLLGARGSKIPCPWIVDHWS--NFS*EKWAKRCRAFSP 28
           +F++G  G K+P  W+V       FS   W   CR F P
Sbjct: 153 YFVVGKDGEKVPVAWLVGRTGLLYFS-AHWCSPCRKFLP 190


>04_04_0754 +
           27803143-27803517,27805441-27806832,27806910-27807164,
           27807246-27807368,27807643-27808119,27808217-27808603
          Length = 1002

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 364 ASSLDIR*DYGQSTFLFYSLYCVIKNTNK*NSSA-DCFETYSYM 492
           +S++D+    G +T  FYS+Y +++  +  N  A D FET S +
Sbjct: 389 SSNMDVLIALGTNTAYFYSVYSILRAASSHNYMATDFFETSSML 432


>12_02_0450 +
           19172812-19172920,19173020-19173088,19173168-19173274,
           19173874-19174365
          Length = 258

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 187 SSSFSLYPPLLCHSSSFLFIGG 122
           SSS +LY  + C SSS LF+GG
Sbjct: 16  SSSPALYQSIRCMSSSKLFVGG 37


>07_03_0845 - 21979581-21981281
          Length = 566

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 258 PPSSLKICR*LPVGVFRQYHLRTSTSRLS 344
           PPS  KIC      +   +HL TSTS L+
Sbjct: 3   PPSKWKICSSFSFLILSIFHLYTSTSALT 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,513,970
Number of Sequences: 37544
Number of extensions: 313022
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)