Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O11
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    58   7e-10
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    27   2.0  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   2.0  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    27   2.7  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    26   3.6  
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    26   4.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   4.7  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    25   6.2  

>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 58.4 bits (135), Expect = 7e-10
 Identities = 27/68 (39%), Positives = 43/68 (63%)
 Frame = +2

Query: 389 TTNEKIVLASMFYPLFALACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVTDPNM 568
           T NE +VLA   + + A++ Q+SP+P SSGI+ L + TF +   QT TG+KF++ T+   
Sbjct: 27  TPNEYLVLAGTIHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKT 86

Query: 569 QGAEVVLK 592
             A + L+
Sbjct: 87  TNARLQLQ 94


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 467 KSSGIETLTSDTFKLSCFQTLTGVKFIIV 553
           KS+GIE +T +     CF  L  +K IIV
Sbjct: 620 KSTGIEEITENGILQKCFHLLPFIKNIIV 648


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 59  LCKPYSTMVIYGVYIVSKSGGLIYNYDHNI 148
           LC    T+ ++ VY+++    L++ YDH++
Sbjct: 98  LCYDDETLPLWMVYVLNDKSELVFIYDHSL 127


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 338 EIKENYPLNLKFGRARATTNEKIVLASMFYPLFALACQLSPVPKSS 475
           +I E+ P  L   R+    +  +  + +FYP+F  AC  S  P++S
Sbjct: 313 DIDEDCPARLAL-RSIDLLSTHLSPSQVFYPMFEAACAFSQSPQAS 357


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 307 CGFSIHRGSIYSKQHIAHVNSIS 239
           CG+ +H   +Y  +H+AHVN I+
Sbjct: 199 CGYCLH---VYCCKHLAHVNCIN 218


>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 491 TSDTFKLSCFQTLTGVKFIIVTDPNMQGAEVVLK 592
           T+  +KL  ++T T ++ I +T+P +     VL+
Sbjct: 74  TTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQ 107


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 19/75 (25%), Positives = 31/75 (41%)
 Frame = -2

Query: 375 PNFKFKG*FSLISKISNTSLPSSVVFPFTGDPFTVSNTLPTLIPSL*PNETTIFLFS*CS 196
           P   F G  S +S  SN    ++    +T  P   + T+ T   S  P ET   + +  +
Sbjct: 537 PTSSFSG-TSALSSSSNEETTTTTQVTYTTSPEETTTTMTTTTCSSRPEETISTVSTTST 595

Query: 195 LMSSGYPNVFSVSTF 151
           +  SG  +    ST+
Sbjct: 596 VSESGSSSASITSTY 610


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 92  GVYIVSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLH 202
           GVYI++ + G I N D  I  +++ K     LD+ L+
Sbjct: 243 GVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFLN 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,650
Number of Sequences: 5004
Number of extensions: 53148
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)