Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O11
(592 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC010866-1|AAH10866.1| 219|Homo sapiens TRAPPC4 protein protein. 206 6e-53
AF151862-1|AAD34099.1| 219|Homo sapiens CGI-104 protein protein. 206 6e-53
AF105025-1|AAF21897.1| 219|Homo sapiens unknown protein. 206 6e-53
BC032717-1|AAH32717.1| 145|Homo sapiens trafficking protein par... 31 2.3
AF129332-1|AAD44697.1| 145|Homo sapiens MUM2 protein. 31 2.3
BC035077-1|AAH35077.1| 804|Homo sapiens SET and MYND domain con... 31 3.0
AK095369-1|BAC04538.1| 804|Homo sapiens protein ( Homo sapiens ... 31 3.0
AB067523-1|BAB67829.1| 558|Homo sapiens KIAA1936 protein protein. 31 3.0
>BC010866-1|AAH10866.1| 219|Homo sapiens TRAPPC4 protein protein.
Length = 219
Score = 206 bits (502), Expect = 6e-53
Identities = 91/171 (53%), Positives = 127/171 (74%)
Frame = +2
Query: 80 MVIYGVYIVSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVG 259
M I+ VY+V+K+GGLIY D P+ E EKTF YPLD+ L +++++V+FGQRDGI VG
Sbjct: 1 MAIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVG 60
Query: 260 NVLLTVNGSPVNGKTTDDGREVFDILEIKENYPLNLKFGRARATTNEKIVLASMFYPLFA 439
+ +L +NG VNG+ T DG+EV + L NYP++++FGR R T+NEK++LASMF+ LFA
Sbjct: 61 HAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFA 120
Query: 440 LACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVTDPNMQGAEVVLK 592
+ QLSP SSGIE L +DTFKL C+QTLTG+KF+++ DP G + +L+
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLR 171
>AF151862-1|AAD34099.1| 219|Homo sapiens CGI-104 protein protein.
Length = 219
Score = 206 bits (502), Expect = 6e-53
Identities = 91/171 (53%), Positives = 127/171 (74%)
Frame = +2
Query: 80 MVIYGVYIVSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVG 259
M I+ VY+V+K+GGLIY D P+ E EKTF YPLD+ L +++++V+FGQRDGI VG
Sbjct: 1 MAIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVG 60
Query: 260 NVLLTVNGSPVNGKTTDDGREVFDILEIKENYPLNLKFGRARATTNEKIVLASMFYPLFA 439
+ +L +NG VNG+ T DG+EV + L NYP++++FGR R T+NEK++LASMF+ LFA
Sbjct: 61 HAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFA 120
Query: 440 LACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVTDPNMQGAEVVLK 592
+ QLSP SSGIE L +DTFKL C+QTLTG+KF+++ DP G + +L+
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLR 171
>AF105025-1|AAF21897.1| 219|Homo sapiens unknown protein.
Length = 219
Score = 206 bits (502), Expect = 6e-53
Identities = 91/171 (53%), Positives = 127/171 (74%)
Frame = +2
Query: 80 MVIYGVYIVSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVG 259
M I+ VY+V+K+GGLIY D P+ E EKTF YPLD+ L +++++V+FGQRDGI VG
Sbjct: 1 MAIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVG 60
Query: 260 NVLLTVNGSPVNGKTTDDGREVFDILEIKENYPLNLKFGRARATTNEKIVLASMFYPLFA 439
+ +L +NG VNG+ T DG+EV + L NYP++++FGR R T+NEK++LASMF+ LFA
Sbjct: 61 HAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFA 120
Query: 440 LACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVTDPNMQGAEVVLK 592
+ QLSP SSGIE L +DTFKL C+QTLTG+KF+++ DP G + +L+
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLR 171
>BC032717-1|AAH32717.1| 145|Homo sapiens trafficking protein
particle complex 1 protein.
Length = 145
Score = 31.5 bits (68), Expect = 2.3
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = +2
Query: 407 VLASMFYPLFALACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVTD 559
++ M + + + ++SP+ G + +KL ++T TG+K ++ TD
Sbjct: 37 LMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTD 87
>AF129332-1|AAD44697.1| 145|Homo sapiens MUM2 protein.
Length = 145
Score = 31.5 bits (68), Expect = 2.3
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = +2
Query: 407 VLASMFYPLFALACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVTD 559
++ M + + + ++SP+ G + +KL ++T TG+K ++ TD
Sbjct: 37 LMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTD 87
>BC035077-1|AAH35077.1| 804|Homo sapiens SET and MYND domain
containing 4 protein.
Length = 804
Score = 31.1 bits (67), Expect = 3.0
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 188 DIKLHHENKKI-VVSFGQRDGINVGNVLLT-VNGSPVNGKTTDDGREVFDILEIKENYPL 361
DI L N ++ +++G + GN++ T + G +NGK ++ VF++L EN+
Sbjct: 378 DICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYENNYNAVFNLLPHTENHSP 437
Query: 362 NLKF 373
KF
Sbjct: 438 EHKF 441
>AK095369-1|BAC04538.1| 804|Homo sapiens protein ( Homo sapiens
cDNA FLJ38050 fis, clone CTONG2014369. ).
Length = 804
Score = 31.1 bits (67), Expect = 3.0
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 188 DIKLHHENKKI-VVSFGQRDGINVGNVLLT-VNGSPVNGKTTDDGREVFDILEIKENYPL 361
DI L N ++ +++G + GN++ T + G +NGK ++ VF++L EN+
Sbjct: 378 DICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYENNYNAVFNLLPHTENHSP 437
Query: 362 NLKF 373
KF
Sbjct: 438 EHKF 441
>AB067523-1|BAB67829.1| 558|Homo sapiens KIAA1936 protein protein.
Length = 558
Score = 31.1 bits (67), Expect = 3.0
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 188 DIKLHHENKKI-VVSFGQRDGINVGNVLLT-VNGSPVNGKTTDDGREVFDILEIKENYPL 361
DI L N ++ +++G + GN++ T + G +NGK ++ VF++L EN+
Sbjct: 182 DICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYENNYNAVFNLLPHTENHSP 241
Query: 362 NLKF 373
KF
Sbjct: 242 EHKF 245
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,509,237
Number of Sequences: 237096
Number of extensions: 1759937
Number of successful extensions: 2827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2827
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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