Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O11
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...   142   2e-34
U29244-17|AAC71097.2|  314|Caenorhabditis elegans Galectin prote...    33   0.15 
AB038506-1|BAB11971.1|  314|Caenorhabditis elegans galectin LEC-...    33   0.15 
Z81107-5|CAB03232.1|  203|Caenorhabditis elegans Hypothetical pr...    31   0.81 
AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical ...    29   1.9  
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    29   3.3  
AF099920-8|AAK29848.1|  402|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z81524-4|CAB04250.1|  528|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical ...    27   10.0 
AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cycl...    27   10.0 
AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.      27   10.0 

>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score =  142 bits (343), Expect = 2e-34
 Identities = 66/160 (41%), Positives = 106/160 (66%), Gaps = 3/160 (1%)
 Frame = +2

Query: 86  IYGVYIVSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVGNV 265
           I  ++I++++G LIY+++      E EKT+ +P+D+ L   ++K VV FG++DGI +   
Sbjct: 5   IQHLFIINRAGSLIYSWEARTETPEVEKTYEWPIDVHLEEVDQKAVVVFGEKDGIKLRYY 64

Query: 266 LLTVNGSPVNGKTTDDGREVFDILEI---KENYPLNLKFGRARATTNEKIVLASMFYPLF 436
           + +VNG  V+G     G +  ++LE    +++YP+ +KF     +TNEKI+L+SMF+ LF
Sbjct: 65  VKSVNGETVSGTRLQLGAQQVNVLEYLQEEDHYPVTVKFAAPTVSTNEKIILSSMFHSLF 124

Query: 437 ALACQLSPVPKSSGIETLTSDTFKLSCFQTLTGVKFIIVT 556
            +A QLSP  KSSG+E L +  FKL C Q+ TGVKF+++T
Sbjct: 125 TIAVQLSPCQKSSGVEVLETTQFKLFCLQSRTGVKFVVIT 164


>U29244-17|AAC71097.2|  314|Caenorhabditis elegans Galectin protein
           5 protein.
          Length = 314

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +2

Query: 176 GYPLDIKLHHENKK--IVVSFGQRDGINVGNVLLT-VNGSPVN-GKTTDDGREVFDILEI 343
           G  +++ L+ ENK+  + VS    +G  V N + + V G     GK   D ++VFDI  I
Sbjct: 206 GKRVNVNLYRENKEYALQVSIRYNEGAVVRNAMTSNVWGKEEREGKMPLDKKQVFDITII 265

Query: 344 KENYPLNLKFGRARATT 394
            E Y   +     R TT
Sbjct: 266 NEEYSFQIFLNNERFTT 282


>AB038506-1|BAB11971.1|  314|Caenorhabditis elegans galectin LEC-5
           protein.
          Length = 314

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +2

Query: 176 GYPLDIKLHHENKK--IVVSFGQRDGINVGNVLLT-VNGSPVN-GKTTDDGREVFDILEI 343
           G  +++ L+ ENK+  + VS    +G  V N + + V G     GK   D ++VFDI  I
Sbjct: 206 GKRVNVNLYRENKEYALQVSIRYNEGAVVRNAMTSNVWGKEEREGKMPLDKKQVFDITII 265

Query: 344 KENYPLNLKFGRARATT 394
            E Y   +     R TT
Sbjct: 266 NEEYSFQIFLNNERFTT 282


>Z81107-5|CAB03232.1|  203|Caenorhabditis elegans Hypothetical
           protein R07H5.7 protein.
          Length = 203

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 585 TTSAPCMFGSVTIINFTPVNVWKHDNLNVSDVKVS 481
           +T+ P  F SV + NFT + +W++  L ++D+  S
Sbjct: 55  STNQPKRFQSVIVSNFTFIKIWEYIPLKINDLLAS 89


>AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical
           protein F16B3.3 protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 245 HLFDQMKRLFFYFHDVV*CQVDTRMF-FQFPLSECC 141
           H FDQ+ +LF+Y    V  +V  R+F   F L  CC
Sbjct: 132 HDFDQVTQLFYYSEKFVAKEVHNRLFVLGFSLMFCC 167


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = +2

Query: 143 NIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGI-------NVGNVLLTVNGSPVNGK 301
           N+  VE  K     L   + +EN KI+V    + GI         G+ LL +NGS + GK
Sbjct: 232 NVKVVEVVKDEDSYLGATVRNENNKIIVGRVVKGGIVEKMNLFQEGDELLELNGSSLKGK 291

Query: 302 TTDDGREVFDIL 337
             +   E+ DIL
Sbjct: 292 QVN---EICDIL 300


>AF099920-8|AAK29848.1|  402|Caenorhabditis elegans Hypothetical
           protein H06H21.9 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +2

Query: 119 GLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGI-----NVGNVLLTVNG 283
           G++   DH I      +     L + +   ++K+VV++   D +     N+G  ++ V+ 
Sbjct: 194 GILATQDHTIDLAILYQFKYLQLGLNVQQVDRKVVVNYTIPDSVSHCSLNIGEAIIAVDD 253

Query: 284 SPVNGKTTDDGREVF 328
            P+N  T  D R+ F
Sbjct: 254 KPIN--TLADNRQRF 266


>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 68  PYSTMVIYGVYIVSKSGGLIYNYDHNIPKVE 160
           P S+  +YG YIV  +G LIY+    IPK E
Sbjct: 495 PTSSEQMYG-YIVDNNGMLIYHPQLQIPKTE 524


>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 68  PYSTMVIYGVYIVSKSGGLIYNYDHNIPKVE 160
           P S+  +YG YIV  +G LIY+    IPK E
Sbjct: 495 PTSSEQMYG-YIVDNNGMLIYHPQLQIPKTE 524


>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 68  PYSTMVIYGVYIVSKSGGLIYNYDHNIPKVE 160
           P S+  +YG YIV  +G LIY+    IPK E
Sbjct: 495 PTSSEQMYG-YIVDNNGMLIYHPQLQIPKTE 524


>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 68  PYSTMVIYGVYIVSKSGGLIYNYDHNIPKVE 160
           P S+  +YG YIV  +G LIY+    IPK E
Sbjct: 495 PTSSEQMYG-YIVDNNGMLIYHPQLQIPKTE 524


>Z81524-4|CAB04250.1|  528|Caenorhabditis elegans Hypothetical
           protein F32H5.4 protein.
          Length = 528

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 434 KEGKTCWLILFFH*LLLV 381
           K GK CWLILFF   +L+
Sbjct: 33  KLGKYCWLILFFSEFMLL 50


>Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical
           protein F02D10.5 protein.
          Length = 638

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 567 MFGSVTIINFTPVNVWKHDNLNVS 496
           +F  VTI N  P+N  K + LN+S
Sbjct: 87  LFPEVTICNLNPLNTTKLEELNIS 110


>AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical
           protein Y71D11A.1 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 348 SLISKISNTSLPSSVVFPFTGDPFTVSNTLPTLIPSL*PNETTI 217
           +L+ K  N +LP + V P T      + T+P    ++ P  TT+
Sbjct: 254 NLVEKSPNLALPKTTVAPTTTTVPRTTTTVPPTTTTVPPTTTTV 297


>AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cyclase
           protein 4 protein.
          Length = 954

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +2

Query: 155 VETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVGNVLLTVNGS 286
           VE    F   L +KL   N     +F  R GINVG V+  V GS
Sbjct: 836 VEAIALFARELLVKLESTNIHSFNNFNLRIGINVGPVVAGVIGS 879


>AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.
          Length = 638

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 567 MFGSVTIINFTPVNVWKHDNLNVS 496
           +F  VTI N  P+N  K + LN+S
Sbjct: 87  LFPEVTICNLNPLNTTKLEELNIS 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,375
Number of Sequences: 27780
Number of extensions: 294664
Number of successful extensions: 727
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)