Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O11
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   3.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.0  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 164 EKTFGYPLDIKLHHEN-KKIVVSFGQRDGINVGNVLLTVNGSPVNGK 301
           +KT G        + N K +VVS  +   IN+  V+  V    V GK
Sbjct: 211 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGK 257


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 200 HHENKKIVVSFGQRDGINVGNVLLTVNG 283
           +H+N ++   FG++ G  +  + LT+ G
Sbjct: 352 NHDNHRVASRFGRQRGDEIVMLTLTLPG 379


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 573 PCMFGSVTIINFTP 532
           PC+F + TI+N  P
Sbjct: 235 PCIFDNATIVNNGP 248


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 158 ETEKTFGYPLDIKLHHENKK 217
           E E  FG+PL+  L + +K+
Sbjct: 499 EVEYVFGHPLNKSLKYSDKE 518


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +2

Query: 101 IVSKSGGLIYNYDHN------IPKVETEKTFGYPLDIKLHHENKKIVV 226
           ++ K   L Y++D++      I   E ++T  YPLD+   H    + V
Sbjct: 38  VIHKWKYLDYDFDNDERRQAAIQSGEYDRTKNYPLDVDQWHNKTFLAV 85


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 FGSVTIINFTPVNVWKHDNL 505
           +G V  +  TP  +WK D L
Sbjct: 55  YGGVKDLRITPNKLWKPDIL 74


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 FGSVTIINFTPVNVWKHDNL 505
           +G V  +  TP  +WK D L
Sbjct: 55  YGGVKDLRITPNKLWKPDIL 74


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 FGSVTIINFTPVNVWKHDNL 505
           +G V  +  TP  +WK D L
Sbjct: 55  YGGVKDLRITPNKLWKPDIL 74


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 FGSVTIINFTPVNVWKHDNL 505
           +G V  +  TP  +WK D L
Sbjct: 55  YGGVKDLRITPNKLWKPDIL 74


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 FGSVTIINFTPVNVWKHDNL 505
           +G V  +  TP  +WK D L
Sbjct: 55  YGGVKDLRITPNKLWKPDIL 74


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 FGSVTIINFTPVNVWKHDNL 505
           +G V  +  TP  +WK D L
Sbjct: 55  YGGVKDLRITPNKLWKPDIL 74


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 FGSVTIINFTPVNVWKHDNL 505
           +G V  +  TP  +WK D L
Sbjct: 123 YGGVKDLRITPNKLWKPDIL 142


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 564 FGSVTIINFTPVNVWKHDNL 505
           +G V  +  TP  +WK D L
Sbjct: 123 YGGVKDLRITPNKLWKPDIL 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,033
Number of Sequences: 438
Number of extensions: 3521
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)