Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O10
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...   103   1e-23
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   3.6  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   3.6  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    26   3.6  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   4.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   4.7  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   6.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.3  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score =  103 bits (248), Expect = 1e-23
 Identities = 56/120 (46%), Positives = 74/120 (61%)
 Frame = -2

Query: 411 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 232
           +K  ELR +               L +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 231 KMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYAVKA 52
             ++  R  YKNKKY PLDLR KKTRA+R+AL+ +E   KT K+I+K+  FP R YA+KA
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -2

Query: 243 VYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSL 82
           V+   + V LR H   +  +   +    +  +    S H AK+K R+ +R   L
Sbjct: 102 VHEIPLGVPLRLHQSKQALRAKAIAESSSTKLESRKSAHNAKVKQRQRLRASGL 155


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -2

Query: 264 AIARVYIVYHQKMKVNLRYHYKNK 193
           ++ +V+I  H+K   ++R+HYK++
Sbjct: 224 SVLKVHISSHEKQVSDVRFHYKHQ 247


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 447 HRGELNVLKMGKVKCSELRTKD 382
           H  ELN LK+G +K SE R  D
Sbjct: 389 HANELNSLKLGALKESEYRWDD 410


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 243 VYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEI 97
           +YH ++     YH K  KY+ L +R+        +L  H A ++  K I
Sbjct: 276 MYHAQL--GREYHEKALKYRSLAMRSLAHSGTSHSLDLHGATVREAKTI 322


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = -2

Query: 222  VNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSL 82
            +N  +H KN  + P D+R          +     +  T   + KKSL
Sbjct: 1134 LNFNFHSKNVNFPPADIRVISVTPKGNNMYDATVQFTTSSTMSKKSL 1180


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 177 DLRTKKTRAMRKALSKHEAKIKTRKEIRKKS 85
           D++TK  RAMR+ +   +   +  +++RKK+
Sbjct: 677 DMQTKAKRAMRETMVFWKRNERVERDLRKKA 707


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 201 KNKKYKPLDLRTKKTRAMRKALSKHEAKIKT-RKEIRK 91
           ++ +YK  DL+ +K +   K LS  EA+ K   +++R+
Sbjct: 187 RDGRYKSEDLKRRKLQPSSKPLSSLEARAKVIMRQVRR 224


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 271 QKSNRPRIHCVPPENEGKPPLP 206
           +KSN P+    PP   G P LP
Sbjct: 62  RKSNTPKSFAAPPVPTGAPSLP 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,256
Number of Sequences: 5004
Number of extensions: 27257
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)