Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O10
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    97   7e-21
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    50   1e-06
12_01_0152 - 1168928-1169377                                           28   4.7  
11_01_0155 - 1287003-1287452                                           28   4.7  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    28   4.7  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    27   8.3  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 97.1 bits (231), Expect = 7e-21
 Identities = 60/141 (42%), Positives = 78/141 (55%), Gaps = 18/141 (12%)
 Frame = -2

Query: 420 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 241
           M ++K  ELR K+              L+ LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKH------------------EAKI 115
             QK +  LR  YK K   PLDLR KKTRA+R+ L+KH                  +  +
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120

Query: 114 KTRKEIRKKSLFPPRVYAVKA 52
           KT +E +++  FP R YA+KA
Sbjct: 121 KTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 36/102 (35%), Positives = 50/102 (49%)
 Frame = -2

Query: 420 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 241
           M ++K   LR ++              L+ LRVA+VTGG  +KLS I+ VR A+      
Sbjct: 108 MARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALREA--- 163

Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKI 115
                     Y  K K   PLDLR KKT A+R+ L+KH+  +
Sbjct: 164 ----------YKKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195


>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 318 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 229
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 318 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 229
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
            9625520-9626032,9626801-9629153
          Length = 1342

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -2

Query: 213  RYHYKN--KKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYAVKA*LHH 40
            R H  N  K   PL  + +K   M+K+++    +  T  E  K  +FPP  Y  K   H 
Sbjct: 1048 RNHINNLAKLAGPLYAKLRKN-GMKKSMNYSGVEFFTFGEDNKLKVFPPNTYKFKPKTHI 1106

Query: 39   ILN 31
            IL+
Sbjct: 1107 ILD 1109


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 237 HQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKE 100
           H K  + ++    NK+   L L+ K+  +  + L + E KI  R+E
Sbjct: 270 HTKATLKIKEDDINKRLAELHLQEKEAESKNRKLEEREKKIAEREE 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,912
Number of Sequences: 37544
Number of extensions: 180518
Number of successful extensions: 586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)