Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O10
(496 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12465-1|AAA51648.1| 123|Homo sapiens ribosomal protein L35 pro... 138 1e-32
CR456877-1|CAG33158.1| 123|Homo sapiens RPL35 protein. 138 1e-32
BC094828-1|AAH94828.1| 123|Homo sapiens ribosomal protein L35 p... 138 1e-32
BC071915-1|AAH71915.1| 123|Homo sapiens ribosomal protein L35 p... 138 1e-32
BC000348-1|AAH00348.1| 123|Homo sapiens ribosomal protein L35 p... 138 1e-32
AL354928-8|CAI39639.1| 123|Homo sapiens ribosomal protein L35 p... 138 1e-32
BC010919-1|AAH10919.1| 123|Homo sapiens RPL35 protein protein. 136 3e-32
AL354928-7|CAI39638.1| 95|Homo sapiens ribosomal protein L35 p... 68 2e-11
AB046409-1|BAB21255.1| 33|Homo sapiens ribosomal protein L35 p... 53 6e-07
BC052806-1|AAH52806.1| 128|Homo sapiens MRPL55 protein protein. 38 0.014
AY358771-1|AAQ89131.1| 164|Homo sapiens AAVG5835 protein. 38 0.014
AL136379-5|CAI23117.1| 164|Homo sapiens mitochondrial ribosomal... 38 0.014
AL136379-4|CAI23118.1| 125|Homo sapiens mitochondrial ribosomal... 38 0.014
AL136379-3|CAI23116.1| 128|Homo sapiens mitochondrial ribosomal... 38 0.014
BC107597-1|AAI07598.1| 417|Homo sapiens LOC130940 protein protein. 32 0.95
BC015395-1|AAH15395.1| 255|Homo sapiens LOC130940 protein protein. 32 0.95
AK058105-1|BAB71668.1| 255|Homo sapiens protein ( Homo sapiens ... 32 0.95
AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein. 32 0.95
AC019044-1|AAX88983.1| 361|Homo sapiens unknown protein. 32 0.95
AY237538-1|AAP04415.1| 1304|Homo sapiens KIF27C protein. 31 1.7
BC106038-1|AAI06039.1| 622|Homo sapiens SRY (sex determining re... 29 8.9
BC034991-1|AAH34991.1| 495|Homo sapiens meiosis-specific nuclea... 29 8.9
BC031046-1|AAH31046.1| 495|Homo sapiens meiosis-specific nuclea... 29 8.9
AL592146-3|CAI16596.1| 604|Homo sapiens SRY (sex determining re... 29 8.9
AK002084-1|BAA92077.1| 495|Homo sapiens protein ( Homo sapiens ... 29 8.9
AF116571-1|AAF23875.1| 604|Homo sapiens SRY-like DNA binding pr... 29 8.9
AF098915-1|AAD16237.1| 622|Homo sapiens type 1 diabetes autoant... 29 8.9
AF083105-1|AAC83687.1| 890|Homo sapiens HMG box factor SOX-13 p... 29 8.9
>U12465-1|AAA51648.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 138 bits (333), Expect = 1e-32
Identities = 73/123 (59%), Positives = 85/123 (69%)
Frame = -2
Query: 420 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 241
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYA 61
+Q K NLR YK KKYKPLDLR KKTRAMR+ L+KHE +KT+K+ RK+ L+P R YA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA 120
Query: 60 VKA 52
VKA
Sbjct: 121 VKA 123
>CR456877-1|CAG33158.1| 123|Homo sapiens RPL35 protein.
Length = 123
Score = 138 bits (333), Expect = 1e-32
Identities = 73/123 (59%), Positives = 85/123 (69%)
Frame = -2
Query: 420 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 241
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYA 61
+Q K NLR YK KKYKPLDLR KKTRAMR+ L+KHE +KT+K+ RK+ L+P R YA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA 120
Query: 60 VKA 52
VKA
Sbjct: 121 VKA 123
>BC094828-1|AAH94828.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 138 bits (333), Expect = 1e-32
Identities = 73/123 (59%), Positives = 85/123 (69%)
Frame = -2
Query: 420 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 241
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYA 61
+Q K NLR YK KKYKPLDLR KKTRAMR+ L+KHE +KT+K+ RK+ L+P R YA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA 120
Query: 60 VKA 52
VKA
Sbjct: 121 VKA 123
>BC071915-1|AAH71915.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 138 bits (333), Expect = 1e-32
Identities = 73/123 (59%), Positives = 85/123 (69%)
Frame = -2
Query: 420 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 241
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYA 61
+Q K NLR YK KKYKPLDLR KKTRAMR+ L+KHE +KT+K+ RK+ L+P R YA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA 120
Query: 60 VKA 52
VKA
Sbjct: 121 VKA 123
>BC000348-1|AAH00348.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 138 bits (333), Expect = 1e-32
Identities = 73/123 (59%), Positives = 85/123 (69%)
Frame = -2
Query: 420 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 241
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYA 61
+Q K NLR YK KKYKPLDLR KKTRAMR+ L+KHE +KT+K+ RK+ L+P R YA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA 120
Query: 60 VKA 52
VKA
Sbjct: 121 VKA 123
>AL354928-8|CAI39639.1| 123|Homo sapiens ribosomal protein L35
protein.
Length = 123
Score = 138 bits (333), Expect = 1e-32
Identities = 73/123 (59%), Positives = 85/123 (69%)
Frame = -2
Query: 420 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 241
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYA 61
+Q K NLR YK KKYKPLDLR KKTRAMR+ L+KHE +KT+K+ RK+ L+P R YA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA 120
Query: 60 VKA 52
VKA
Sbjct: 121 VKA 123
>BC010919-1|AAH10919.1| 123|Homo sapiens RPL35 protein protein.
Length = 123
Score = 136 bits (330), Expect = 3e-32
Identities = 72/123 (58%), Positives = 85/123 (69%)
Frame = -2
Query: 420 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 241
M K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYA 61
+Q K NLR YK KKYKPLDLR KKTRAMR+ L+KHE +KT+K+ RK+ L+P R YA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA 120
Query: 60 VKA 52
V+A
Sbjct: 121 VRA 123
>AL354928-7|CAI39638.1| 95|Homo sapiens ribosomal protein L35
protein.
Length = 95
Score = 67.7 bits (158), Expect = 2e-11
Identities = 39/72 (54%), Positives = 44/72 (61%)
Frame = -2
Query: 414 KVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 235
K+K +LR K L+ LRVAKVTGG ASKLSKIRVVRK+IARV V +
Sbjct: 2 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVIN 61
Query: 234 QKMKVNLRYHYK 199
Q K NLR YK
Sbjct: 62 QTQKENLRKFYK 73
>AB046409-1|BAB21255.1| 33|Homo sapiens ribosomal protein L35
protein.
Length = 33
Score = 52.8 bits (121), Expect = 6e-07
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = -2
Query: 330 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 232
LRVAKVTGG ASKLSKIRVVRK+IARV V +Q
Sbjct: 1 LRVAKVTGGAASKLSKIRVVRKSIARVLTVINQ 33
>BC052806-1|AAH52806.1| 128|Homo sapiens MRPL55 protein protein.
Length = 128
Score = 38.3 bits (85), Expect = 0.014
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = -2
Query: 300 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRYHYKNKKYK-PLDLRTKKTRAMRKALS 133
+S+ S RV R+A AR+Y +V +++RY + P+DL T R L
Sbjct: 35 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 94
Query: 132 KHEAKIKTRKEIRKK 88
K EA++++RKE ++
Sbjct: 95 KREAQLQSRKEYEQE 109
>AY358771-1|AAQ89131.1| 164|Homo sapiens AAVG5835 protein.
Length = 164
Score = 38.3 bits (85), Expect = 0.014
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = -2
Query: 300 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRYHYKNKKYK-PLDLRTKKTRAMRKALS 133
+S+ S RV R+A AR+Y +V +++RY + P+DL T R L
Sbjct: 71 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 130
Query: 132 KHEAKIKTRKEIRKK 88
K EA++++RKE ++
Sbjct: 131 KREAQLQSRKEYEQE 145
>AL136379-5|CAI23117.1| 164|Homo sapiens mitochondrial ribosomal
protein L55 protein.
Length = 164
Score = 38.3 bits (85), Expect = 0.014
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = -2
Query: 300 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRYHYKNKKYK-PLDLRTKKTRAMRKALS 133
+S+ S RV R+A AR+Y +V +++RY + P+DL T R L
Sbjct: 71 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 130
Query: 132 KHEAKIKTRKEIRKK 88
K EA++++RKE ++
Sbjct: 131 KREAQLQSRKEYEQE 145
>AL136379-4|CAI23118.1| 125|Homo sapiens mitochondrial ribosomal
protein L55 protein.
Length = 125
Score = 38.3 bits (85), Expect = 0.014
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = -2
Query: 300 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRYHYKNKKYK-PLDLRTKKTRAMRKALS 133
+S+ S RV R+A AR+Y +V +++RY + P+DL T R L
Sbjct: 32 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 91
Query: 132 KHEAKIKTRKEIRKK 88
K EA++++RKE ++
Sbjct: 92 KREAQLQSRKEYEQE 106
>AL136379-3|CAI23116.1| 128|Homo sapiens mitochondrial ribosomal
protein L55 protein.
Length = 128
Score = 38.3 bits (85), Expect = 0.014
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = -2
Query: 300 ASKLSKIRVVRKAIARVY---IVYHQKMKVNLRYHYKNKKYK-PLDLRTKKTRAMRKALS 133
+S+ S RV R+A AR+Y +V +++RY + P+DL T R L
Sbjct: 35 SSRASLTRVHRQAYARLYPVLLVKQDGSTIHIRYREPRRMLAMPIDLDTLSPEERRARLR 94
Query: 132 KHEAKIKTRKEIRKK 88
K EA++++RKE ++
Sbjct: 95 KREAQLQSRKEYEQE 109
>BC107597-1|AAI07598.1| 417|Homo sapiens LOC130940 protein protein.
Length = 417
Score = 32.3 bits (70), Expect = 0.95
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 219 NLRYHYKNK----KYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSL 82
NL +H KN+ KYKP+D + + K L+ AK+K RK + L
Sbjct: 10 NLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKL 59
>BC015395-1|AAH15395.1| 255|Homo sapiens LOC130940 protein protein.
Length = 255
Score = 32.3 bits (70), Expect = 0.95
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 219 NLRYHYKNK----KYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSL 82
NL +H KN+ KYKP+D + + K L+ AK+K RK + L
Sbjct: 10 NLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKL 59
>AK058105-1|BAB71668.1| 255|Homo sapiens protein ( Homo sapiens
cDNA FLJ25376 fis, clone TST02010. ).
Length = 255
Score = 32.3 bits (70), Expect = 0.95
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 219 NLRYHYKNK----KYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSL 82
NL +H KN+ KYKP+D + + K L+ AK+K RK + L
Sbjct: 10 NLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKL 59
>AF458588-1|AAM49716.1| 591|Homo sapiens unknown protein.
Length = 591
Score = 32.3 bits (70), Expect = 0.95
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 219 NLRYHYKNK----KYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSL 82
NL +H KN+ KYKP+D + + K L+ AK+K RK + L
Sbjct: 10 NLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKL 59
>AC019044-1|AAX88983.1| 361|Homo sapiens unknown protein.
Length = 361
Score = 32.3 bits (70), Expect = 0.95
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 219 NLRYHYKNK----KYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSL 82
NL +H KN+ KYKP+D + + K L+ AK+K RK + L
Sbjct: 1 NLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKL 50
>AY237538-1|AAP04415.1| 1304|Homo sapiens KIF27C protein.
Length = 1304
Score = 31.5 bits (68), Expect = 1.7
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 237 HQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSL 82
+QK+++ + +N+K K LD K+ + KAL+ KI TR + ++ L
Sbjct: 850 YQKIQLQRKLREENEKRKQLDAVIKRDQQKIKALNTDSLKISTRLNLLEQEL 901
>BC106038-1|AAI06039.1| 622|Homo sapiens SRY (sex determining
region Y)-box 13 protein.
Length = 622
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 204 YKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRK-EIRKKSLFPPRVYAVK 55
Y + KYKP RT R + +++A ++TR+ + R+ + PP+ V+
Sbjct: 488 YPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYVIPPQAGQVQ 538
>BC034991-1|AAH34991.1| 495|Homo sapiens meiosis-specific nuclear
structural 1 protein.
Length = 495
Score = 29.1 bits (62), Expect = 8.9
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = -2
Query: 279 RVVRKAIARVYI--VYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEA--KIK 112
RV RK R+ + M+ ++ +NK+ K L L+ ++ AM A KHE+ K
Sbjct: 50 RVQRKQFLRLLQNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEK 109
Query: 111 TRKEIRKKSL 82
R+++R+ S+
Sbjct: 110 MRQQVRENSI 119
>BC031046-1|AAH31046.1| 495|Homo sapiens meiosis-specific nuclear
structural 1 protein.
Length = 495
Score = 29.1 bits (62), Expect = 8.9
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = -2
Query: 279 RVVRKAIARVYI--VYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEA--KIK 112
RV RK R+ + M+ ++ +NK+ K L L+ ++ AM A KHE+ K
Sbjct: 50 RVQRKQFLRLLQNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEK 109
Query: 111 TRKEIRKKSL 82
R+++R+ S+
Sbjct: 110 MRQQVRENSI 119
>AL592146-3|CAI16596.1| 604|Homo sapiens SRY (sex determining
region Y)-box 13 protein.
Length = 604
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 204 YKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRK-EIRKKSLFPPRVYAVK 55
Y + KYKP RT R + +++A ++TR+ + R+ + PP+ V+
Sbjct: 470 YPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYVIPPQAGQVQ 520
>AK002084-1|BAA92077.1| 495|Homo sapiens protein ( Homo sapiens
cDNA FLJ11222 fis, clone PLACE1008177. ).
Length = 495
Score = 29.1 bits (62), Expect = 8.9
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = -2
Query: 279 RVVRKAIARVYI--VYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEA--KIK 112
RV RK R+ + M+ ++ +NK+ K L L+ ++ AM A KHE+ K
Sbjct: 50 RVQRKQFLRLLQNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEK 109
Query: 111 TRKEIRKKSL 82
R+++R+ S+
Sbjct: 110 MRQQVRENSI 119
>AF116571-1|AAF23875.1| 604|Homo sapiens SRY-like DNA binding
protein protein.
Length = 604
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 204 YKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRK-EIRKKSLFPPRVYAVK 55
Y + KYKP RT R + +++A ++TR+ + R+ + PP+ V+
Sbjct: 470 YPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYVIPPQAGQVQ 520
>AF098915-1|AAD16237.1| 622|Homo sapiens type 1 diabetes
autoantigen ICA12 protein.
Length = 622
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 204 YKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRK-EIRKKSLFPPRVYAVK 55
Y + KYKP RT R + +++A ++TR+ + R+ + PP+ V+
Sbjct: 488 YPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYVIPPQAGQVQ 538
>AF083105-1|AAC83687.1| 890|Homo sapiens HMG box factor SOX-13
protein.
Length = 890
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 204 YKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRK-EIRKKSLFPPRVYAVK 55
Y + KYKP RT R + +++A ++TR+ + R+ + PP+ V+
Sbjct: 471 YPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYVIPPQAGQVQ 521
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,442,419
Number of Sequences: 237096
Number of extensions: 973665
Number of successful extensions: 3229
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3229
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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