Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O10
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...   106   8e-24
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   2.4  
U40797-9|AAK95870.1|  349|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z66520-6|CAA91385.1|  226|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical p...    27   7.5  
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    27   7.5  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    27   7.5  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    27   9.9  
AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical ...    27   9.9  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    27   9.9  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score =  106 bits (255), Expect = 8e-24
 Identities = 59/123 (47%), Positives = 74/123 (60%)
 Frame = -2

Query: 420 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 241
           M K+KC  LR +               L  LRV+KVTGG ASKLSKIRVVRK IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPPRVYA 61
            +Q  K  LR  Y + KYKP+DLR KKTRA+R+ L+ HE  +++ K+  K      R +A
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFA 120

Query: 60  VKA 52
           VKA
Sbjct: 121 VKA 123


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 219 NLRYHYKNKKYKPLDLR--TKKTRAMRKALSKHEAKIKTRKEIRKKSL 82
           N+RY Y+N K+ P  +R  TKK + ++  L  H    K  KE+ K+++
Sbjct: 64  NIRYGYRNGKWGPSKVRHATKKEQEIKYFL--HPDGTKLGKELMKETI 109


>U40797-9|AAK95870.1|  349|Caenorhabditis elegans Hypothetical
           protein C28C12.12 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 234 QKMKVNLRYHYK-NKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFPP 73
           +KM   LRY    N++   ++ + KKT+ +   L KH AK+    ++ KKS   P
Sbjct: 139 KKMVQELRYELMPNEERDRVEYQRKKTKKLVDGLLKHTAKV-FYVDVEKKSKEDP 192


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical protein
            Y37A1B.1a protein.
          Length = 1222

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 303  VASKLSKIRVVRKAIARVYIVYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSK 130
            V+ +LS I  +R+A A +     +K  ++  YH  NKK      + K T+    AL +
Sbjct: 1072 VSEQLSLIEQLREAKAEID---KKKKDIDSHYHKSNKKLNETSAQLKSTQDENSALKQ 1126


>Z66520-6|CAA91385.1|  226|Caenorhabditis elegans Hypothetical
           protein F49E12.8 protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 265 SNRPRIHCVPPENEGKPPL 209
           S+R R+H  PP +EG+ PL
Sbjct: 19  SSRYRVHSAPPTSEGRIPL 37


>U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical
           protein C17G10.6b protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 271 QKSNRPRIHCVPPENEG-KPPLPLQE 197
           +K  R +I+C PP+ E  +PP PL +
Sbjct: 403 KKQKRKKINCPPPQREHYQPPQPLPQ 428


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 271 QKSNRPRIHCVPPENEG-KPPLPLQE 197
           +K  R +I+C PP+ E  +PP PL +
Sbjct: 454 KKQKRKKINCPPPQREHYQPPQPLPQ 479


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
            protein Y37A1B.1a protein.
          Length = 1222

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 303  VASKLSKIRVVRKAIARVYIVYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSK 130
            V+ +LS I  +R+A A +     +K  ++  YH  NKK      + K T+    AL +
Sbjct: 1072 VSEQLSLIEQLREAKAEID---KKKKDIDSHYHKSNKKLNETSAQLKSTQDENSALKQ 1126


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKK 88
           + QK K  ++   K+KK K    + KK +   K  +K + + + R+E RKK
Sbjct: 288 FEQKKKKKVKKSKKSKKDKK---KEKKEKKKSKKANKEKEERRARREQRKK 335


>Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical
           protein R10D12.8 protein.
          Length = 588

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 282 IRVVRKAIARVYIVYHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRK 142
           IR++ KA+         K K+ ++++  N K  PL   T K  +  K
Sbjct: 523 IRIIEKAVENTLCSSVNKEKLRMKFNLANSKQMPLAESTLKRESKDK 569


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 219 NLRYHYKNKKYKPLDLR--TKKTRAMRKALSKHEAKIKTRKEIRKKSL 82
           N+RY +KN K+ P  +R  TKK + ++  L  H    K  +E+ K+++
Sbjct: 64  NIRYGFKNGKWGPSKVRHATKKEQEIKYFL--HPDGTKLGEELMKETI 109


>AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical
           protein Y79H2A.3b protein.
          Length = 1271

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFP 76
           YH    +N+ + Y +   + LD   ++ +A++  +S    +  T+K  R  S FP
Sbjct: 324 YHAMKYLNMIHSYNSYLAQQLDGPERRAKALKMLISTLTLENDTKKVARTLSHFP 378


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
           protein Y79H2A.3a protein.
          Length = 2129

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 240 YHQKMKVNLRYHYKNKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRKKSLFP 76
           YH    +N+ + Y +   + LD   ++ +A++  +S    +  T+K  R  S FP
Sbjct: 324 YHAMKYLNMIHSYNSYLAQQLDGPERRAKALKMLISTLTLENDTKKVARTLSHFP 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,110,629
Number of Sequences: 27780
Number of extensions: 159042
Number of successful extensions: 528
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)