Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O10
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.58 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.5  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +1

Query: 31  IQYMM*LSLY-SIHSRWKERLLSNFLPSFDFCFMFAQSLTHSTSLLCSQVQRLIFLVLVM 207
           I Y+  L+ Y    S  K  L  N L S    F+    +  STSL    + + +   +++
Sbjct: 249 ISYLSVLAFYLPADSGEKIALCINILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMIL 308

Query: 208 VAEVYLHFLVVHNVY 252
           V    +  +V+ NV+
Sbjct: 309 VGLSVVITIVILNVH 323


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 184 LIFLVLVMVAEVYLHFLVVHN 246
           L+F++LV +A     F+VV N
Sbjct: 88  LLFILLVQIAVAVYAFIVVKN 108


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 238 VHNVYAGDCFSDN 276
           +HN++  DCF  N
Sbjct: 84  LHNIWRPDCFFKN 96


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 198 NKKYKPLDLRTKKTRAMRKALSKHEAKIKTRKEIRK 91
           NK+  P   +    +  RK  +  +  I +RKE +K
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKK 813


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,331
Number of Sequences: 438
Number of extensions: 1631
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)