Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O08
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 30 0.23
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.31
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.54
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.71
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 0.71
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 1.2
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 27 1.6
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 2.9
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.9
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 26 2.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.8
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 3.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 3.8
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 25 5.0
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 5.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy... 25 6.7
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 6.7
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 6.7
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.8
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 8.8
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.9 bits (64), Expect = 0.23
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +3
Query: 117 MSERLKNSAQTSNEDIIDDLTKDLKSSLGT 206
+S+ ++ S Q++NED+I ++ K +KS+L T
Sbjct: 156 LSKCIETSIQSTNEDLIKEIWKCIKSNLNT 185
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.31
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +3
Query: 111 TTMSERLKNSAQTSNEDIIDDLTKDLKSSLGTIENSEGNFTSSETDSPELPSKSQGSGDT 290
+T S ++A TS + + SS +S TSS + +PS S S T
Sbjct: 191 STSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSST 250
Query: 291 PKTAPSQS 314
+ S S
Sbjct: 251 SSSLSSSS 258
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 0.54
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = +3
Query: 135 NSAQTSNEDIIDDLTKDLKSSLGTIENSEGNFTSSETDSPELPSKSQGSGDTPKTAPSQS 314
N+A+ SN + + SS T N FT +E SP S +TPK S
Sbjct: 266 NAAKPSNSEECN--IPKFNSSFKT-SNDFFTFTKTEESSPYSFSFKLEDSNTPKFKSSSK 322
Query: 315 HVDKNYDFTEDEAK 356
V ++ FT+ EA+
Sbjct: 323 PVKSSFVFTKPEAE 336
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 28.3 bits (60), Expect = 0.71
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Frame = +3
Query: 159 DIIDDLTKDLKSSLGTIENSEGNFTSSETDSPELPSKSQGS--GDTPKTAPSQSHVDKNY 332
DI D + +D+K + +ENS ++T+ + K + S PK++ + ++
Sbjct: 8 DIKDVVERDMKKNSKVVENSSARSLKNKTEENKTIDKHKSSVGPKEPKSSLEKPKANRKR 67
Query: 333 DFTEDEAKEGXXXXXXXXXXXXLKDAEVDMTDEEKEYRRSVAEEFKLKGNDAF 491
+ + ++D E +DEE E+ ++ K G DAF
Sbjct: 68 KQSYGLLHDIKELGGTEEDLELIEDVE---SDEELEFEEPNRKQPKKDGTDAF 117
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 0.71
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 171 DLTKDLKSSLGTIENSEGNFTSSETDSPELPSKSQGSGDTPKTAPSQSHVDKNY 332
D T + + I +G SSETDS +K+ + D P T ++ ++ +
Sbjct: 326 DKTDAIAEKVSDIRLGDGEKKSSETDSEVAATKTPATEDAPATNAGEAEEEEGW 379
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.5 bits (58), Expect = 1.2
Identities = 22/86 (25%), Positives = 37/86 (43%)
Frame = +3
Query: 102 NLYTTMSERLKNSAQTSNEDIIDDLTKDLKSSLGTIENSEGNFTSSETDSPELPSKSQGS 281
N ++ E + +A EDI D++ D S +E SSE D+ E+ S QG
Sbjct: 467 NSPNSIRETEEYAASPKLEDIADEVETDATSQRELLERQIQKAESSE-DTSEIES-LQGK 524
Query: 282 GDTPKTAPSQSHVDKNYDFTEDEAKE 359
P+ + +Q + + E + E
Sbjct: 525 LSLPQVSSTQQEIQPSSSVPEAASNE 550
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 1.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 399 LKDAEV--DMTDEEKEYRRSVAEEFKLKGNDAFLVADY 506
LKDAE ++ D E AEE ++KGN+ F D+
Sbjct: 378 LKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDF 415
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 453 VAEEFKLKGNDAFLVADYE 509
+AEE K KGN AF DY+
Sbjct: 1 MAEELKAKGNAAFSKKDYK 19
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 2.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = +3
Query: 159 DIIDDLTKDLKSSLGTIENSEGNFTSSETDSPELPSKSQGSGDTPKT-APSQS----HVD 323
D +D T + ++ T E S E SP P + PK+ +P Q+ +D
Sbjct: 1029 DAVDTSTATVAATTTTAEEELPQKESQERSSPS-PENQDSTPLAPKSVSPKQAARTLDID 1087
Query: 324 KNYDFTEDE 350
+NYD E E
Sbjct: 1088 ENYDDDEGE 1096
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 129 LKNSAQTSNEDIIDDLTKDLKSSLGTIENSEGNFTSSETDSPELPSK--SQGSGDTPKTA 302
L++ N + D+ D+K + GT++N F T + + SK S+ S +T
Sbjct: 239 LESKVLPQNNETSDEENVDVKPAAGTVKNVMQAFLQPATPAKDTASKEPSKSSQQPVRTK 298
Query: 303 P 305
P
Sbjct: 299 P 299
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 219 EGNFTSSETDSPELPSKSQGSGDTPKTAPSQS 314
+G F SS ++ P SK Q G P T S S
Sbjct: 113 QGRFPSSSSEFPPKNSKYQLPGSMPNTGASSS 144
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 213 NSEGNFTSSETDSPELPSKSQGSGDTP-KTAPSQSHV 320
NS +FTSS + +P + S SG P K+ S +HV
Sbjct: 206 NSSSSFTSSTSSTP-ISSSYSSSGTLPSKSNKSSNHV 241
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 186 LKSSLGTIENSEGNFTSSETDSPELPSKSQGSGDTPKTAPS 308
+ +SL T E +F+S+ P L SKS G+T + + S
Sbjct: 235 ISNSLNTQEVVLPSFSSNAKPKPHLSSKSSSQGNTLQRSTS 275
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +3
Query: 237 SETDSPELPSKSQGSGD-TPKTAPSQSHVDKNYDFTEDEAKEGXXXXXXXXXXXXLKDAE 413
SE D+P ++Q + PK +PSQS N + K+ L +
Sbjct: 10 SERDNPGDKVETQSDKNHLPKASPSQSQSPVNTSLHNGDGKDNGVATEPVENKQILSERS 69
Query: 414 VDMTDEEK 437
V D EK
Sbjct: 70 VTRDDYEK 77
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 426 DEEKEYRRSVAEEFKLKGNDAFLVADYE 509
D + AE+ KL+GN+A DY+
Sbjct: 73 DSTAHVNKEEAEKLKLEGNNAIAAKDYQ 100
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 5.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 123 ERLKNSAQTSN--EDIIDDLTKDLKSSLGTIENSEGNFTSSETDSPELPSKSQ 275
+ LKNS S + +LG+ ++ GN S + S ELPSK++
Sbjct: 185 QHLKNSPPNSRTARKPVPRRANSASHNLGSTKSPNGNAKESLSRSAELPSKAK 237
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 147 TSNEDIIDDLTKDLKSSLGTIENSEGNFTSSETDSPELPSKSQGSGDTPKTAPSQSHVDK 326
+S E +D +L SS +N E S TD + + + ++ S+ ++
Sbjct: 36 SSEESESEDKESNLTSSENIGKNPERELNSDGTDRIIEEEEEEDDIENEASSFSEQSENE 95
Query: 327 NYDFT 341
NYDF+
Sbjct: 96 NYDFS 100
>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 108 YTTMSERLKNSAQTSNEDIIDDLTKDLKSSLGTIENS 218
Y + R+K + + + LTKDL S+ +E +
Sbjct: 88 YRNLENRMKRDMEQTRAFAVQKLTKDLLDSVDNLERA 124
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 204 TIENSEGNFTSSETDSPELPSKSQGSGDTPKTAPSQ-SHVDK 326
+I+N N TSSE + S TP T P + SH+ K
Sbjct: 20 SIKNGLNNLTSSELVNQMKKESLAASVKTPSTPPKECSHLKK 61
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/70 (21%), Positives = 27/70 (38%)
Frame = +3
Query: 135 NSAQTSNEDIIDDLTKDLKSSLGTIENSEGNFTSSETDSPELPSKSQGSGDTPKTAPSQS 314
NS++ +++ + S GT G F D+P++P Q + P +
Sbjct: 25 NSSEPPTTSNVNNTQSTGRGSSGT-STEHGTFKKGRNDAPDVPQWKQVNAKNPVARDIFA 83
Query: 315 HVDKNYDFTE 344
+D F E
Sbjct: 84 RLDLENMFEE 93
>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 24.6 bits (51), Expect = 8.8
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = -2
Query: 250 LSVSELVKLPSEFSIVPSDDFKSFVRSSIISSFDV*ALFFSLSDMVVYKFSS 95
L++S L+ P FS+ P + +F S+ + S + A++ ++SD ++S
Sbjct: 103 LALSMLIDRPILFSLAPYAIYATFHISTYLRSVLLPAIYPNISDAKTASYAS 154
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 24.6 bits (51), Expect = 8.8
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 99 ENLYTTMSERLKNSAQTSNEDIIDDLTKDLKSSLGTIENSEGNFTSSETDSPELPSKSQG 278
E+ ++ ERL+ S + I +DLT++ K T+++ G F S ++ L S+ +
Sbjct: 588 ESSLRSVRERLEIRISLSVQSI-NDLTENKKIKTKTLKSYSGTFASMISEIKALESEIEE 646
Query: 279 SGDT 290
+ T
Sbjct: 647 NRKT 650
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,381
Number of Sequences: 5004
Number of extensions: 34049
Number of successful extensions: 140
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -