Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O08
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.9  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   9.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 93  FDENLYT-TMSERLKNSAQTSNEDIIDDLTKDLKSSLGTIENSEGNFTS 236
           FDE L    +SE+L+       ED+I+   + L +S+    N++ NF S
Sbjct: 425 FDEELILGELSEKLR-------EDVINYNCRSLVASVPFFANADSNFVS 466


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 93  FDENLYT-TMSERLKNSAQTSNEDIIDDLTKDLKSSLGTIENSEGNFTS 236
           FDE L    +SE+L+       ED+I+   + L +S+    N++ NF S
Sbjct: 393 FDEELILGELSEKLR-------EDVINYNCRSLVASVPFFANADSNFVS 434


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 420 MTDEEKEYRRSVAEEF 467
           + +EE+EY  SV  EF
Sbjct: 351 LQEEEEEYSPSVQHEF 366


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 219 EGNFTSSETDSPELPSKSQG 278
           EG++ SS  DSP     S G
Sbjct: 64  EGSYDSSSGDSPVSSHSSNG 83


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 321 LHVTVKELFLVCLQSPEI*KVTLDYQFQ 238
           L  T+K L  VC +  +  K  LD QF+
Sbjct: 6   LKKTIKNLRKVCSKKNDTPKELLDGQFR 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,964
Number of Sequences: 438
Number of extensions: 2371
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)