Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O07
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   2.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   3.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   6.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.1  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 436 CVFFFYNISLITSATVASLCS 374
           C FFF ++ LITS  V    S
Sbjct: 7   CTFFFLSVILITSYFVTPTMS 27


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 344 NINGLQLTQPATQGGYGGRRN*TNV 418
           N+    LT+P T   YG R N T V
Sbjct: 196 NVLATSLTEPYTLRNYGRRINCTYV 220


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 97  GIEVKSKPSVVFFDYNLRRFFYGLSPNTTL 8
           GI  K     V++DY    +F  LSPN T+
Sbjct: 60  GIHRKKVLLSVWWDYKGIVYFELLSPNRTI 89


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +2

Query: 131 PTKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD 310
           P  P  +K +  TT  +++ +        IK  E      D+  PE    E++  ++D D
Sbjct: 276 PATPKGSKCSMITTPEIKKEVEDMEYD-DIKT-ELSTGMNDDIPPETEEEEENDKKLDLD 333

Query: 311 TKDMLKM 331
           + DM+++
Sbjct: 334 SIDMMQL 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,761
Number of Sequences: 438
Number of extensions: 2440
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)