Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O05
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0368 + 17241156-17241308,17243745-17243993,17244104-172442...    27   9.3  

>10_08_0368 +
           17241156-17241308,17243745-17243993,17244104-17244206,
           17244291-17244390,17244556-17244666,17245302-17245407,
           17245550-17245640,17245951-17246092,17246370-17246517,
           17246597-17246706,17247131-17247287,17247439-17247564,
           17247646-17247786
          Length = 578

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 374 LAYTNLVISFVVCCIEDNKLQCDSGLIIINIL*RIEYNKLQVKQY 240
           L Y  +  +FV   I DNK+  D+   I  IL + +YN L  + +
Sbjct: 233 LLYLEVRDAFVDYWINDNKITMDTASQIFEILRKPDYNYLTQEDF 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,512,447
Number of Sequences: 37544
Number of extensions: 110967
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)