Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O01
         (592 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.5  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   5.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   7.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 24  PFFNIAGGTSETINQNIDTW 83
           PF +I GG S +  Q  D W
Sbjct: 87  PFSSIGGGISASKRQRTDDW 106


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 492 KFTTTFPLTVPHEYSFIRVLV 430
           K+TT F  T PH ++F    V
Sbjct: 345 KYTTYFLNTYPHLFNFFEFSV 365


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 479 VVVNLNLHPKRLVLACSTNLPAHLIYRC 562
           V +  N+H   L L CS     HL++ C
Sbjct: 62  VSITFNVH--LLFLLCSGYFTVHLLFYC 87


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 43  EEPQKPSIKTSIPGPKSQKLMQELSAIQQAG 135
           +E ++PS K+  P   S  +      +QQAG
Sbjct: 44  DEEERPSFKSRKPKNYSAPIGFVAGGVQQAG 74


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 146 FSPIMISPSAI 178
           F+P MI+PSAI
Sbjct: 189 FAPTMINPSAI 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,597
Number of Sequences: 336
Number of extensions: 2909
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)