Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O01
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...   159   3e-40
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    34   0.018
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    31   0.095
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    31   0.17 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    28   1.2  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   2.7  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    26   4.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.2  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.2  
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    25   8.3  

>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score =  159 bits (386), Expect = 3e-40
 Identities = 81/183 (44%), Positives = 108/183 (59%), Gaps = 1/183 (0%)
 Frame = +1

Query: 46  EPQKPSIKT-SIPGPKSQKLMQELSAIQQAGAVQLFADYDKSIGNYFVDADGNEFLDAFT 222
           EPQ PSIKT +IPGPK +   +E+S      AV+   DY+KSIGNY VD DGN  LD ++
Sbjct: 17  EPQGPSIKTETIPGPKGKAAAEEMSKYHDISAVKFPVDYEKSIGNYLVDLDGNVLLDVYS 76

Query: 223 QISSQPVGYNHPELLSAFEDQHNLRALVNRPALGVFPSADWPEKLKNVLLSVAPEQFNSV 402
           QI++ P+GYN+P LL A +       L+NRPALG +P  +W        +  AP+    V
Sbjct: 77  QIATIPIGYNNPTLLKAAKSDEVATILMNRPALGNYPPKEWARVAYEGAIKYAPKGQKYV 136

Query: 403 VTMMCGSCANENAYKAVFMWYRQRERGGKLEFTPEEISSCMLNQPPGSPNLSMLSFEGSF 582
              M GS ANE AYK   + +   +     ++T EE  SC+ N  PGSP +++LSF  SF
Sbjct: 137 YFQMSGSDANEIAYKLAMLHHFNNKPRPTGDYTAEENESCLNNAAPGSPEVAVLSFRHSF 196

Query: 583 HGR 591
           HGR
Sbjct: 197 HGR 199


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
 Frame = +1

Query: 130 AGAVQLFADYD----KSIGNYFVDADGNEFLDAFTQISSQPVGYNHPELLSAFEDQ---- 285
           A  + ++A Y     K  G+Y  D +G +++D  + ++   +G+ HPE+     DQ    
Sbjct: 45  ANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKL 104

Query: 286 -HNLRALVNRPAL 321
            H+     N PA+
Sbjct: 105 VHSSNLFYNEPAI 117


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 31.5 bits (68), Expect = 0.095
 Identities = 23/99 (23%), Positives = 41/99 (41%)
 Frame = +1

Query: 172 GNYFVDADGNEFLDAFTQISSQPVGYNHPELLSAFEDQHNLRALVNRPALGVFPSADWPE 351
           G Y    DG   +DA    +   +G+ + E++ A   Q      ++       P+    +
Sbjct: 36  GVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQSEKVCYIHSMGFSNEPA----D 91

Query: 352 KLKNVLLSVAPEQFNSVVTMMCGSCANENAYKAVFMWYR 468
           KL N+L+S  P+ F        GS A E   K +  +++
Sbjct: 92  KLANLLVSEHPDVFARAYFANSGSEAVETCLKLILQYWQ 130


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 157 YDKSIGNYFVDADGNEFLDAFTQISSQPVGYNHPELLSAFEDQHNLRALVNR 312
           + K+ G    D +G E+LD  +  S+   G+ HP+++ A  +Q     L +R
Sbjct: 35  FSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSR 86


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 460 WYRQRERGGKLEFTPEEISSCMLNQPPGSPNLSMLSFEGSFHGR 591
           W +Q+++G    F P +++    +  P SP++   S  G +HGR
Sbjct: 400 WQQQQQQGAAY-FDPSKMNQGTGDGVPFSPSMPSGSSRGGYHGR 442


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 560 IDRLGEPGGWLSMQELISSGVNSSLPP 480
           +DR+GE    L++  L+S+G+    PP
Sbjct: 368 LDRIGESKYLLALNNLVSAGIVQDYPP 394


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 116 PQFSKPALSSFSPIMISPSAIILLMRMVMSF*THSHKFLHSPW 244
           P F++  LSSFS   I    I+ L+R    F  H + +  + W
Sbjct: 209 PHFARKELSSFSDSAIQCLDIVALLRAFSLF-AHHYSYRCNTW 250


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 470  KGNVVVNLNLHPKRLVLACSTNLPAHL-IYRCYRLKV 577
            K + ++ L  HP  L+LAC  N  + + +Y C + ++
Sbjct: 1269 KPSSLMCLKFHPHHLLLACGDNTDSRVNLYSCTKNEI 1305


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 11  KVQGAFLQYCWRNLRNHQSKHRYLDLN 91
           K   A + YC R L +   KH Y++LN
Sbjct: 48  KSYSASIDYCQRFLFSSNLKHNYVNLN 74


>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 513 NLFGCKFKFTTTFPLTVPHEYSFIRVLVSAR 421
           NL GC   F+  +   +P E+++ R ++  R
Sbjct: 157 NLHGCPLSFSLGYAEPLPEEFAWTRRVIEER 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,763
Number of Sequences: 5004
Number of extensions: 49494
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)