Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O01
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   1.7  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.8  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   9.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 443 IKLYSCGTVKGNVVVNLNLHPKRLVLACSTNLPAHLIYRC 562
           +KL     +   ++VN+N      +L  + N PA+L  +C
Sbjct: 127 LKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKC 166


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 33  NIAGGTSETINQNIDTWT*ITKINARV 113
           +IAGGTSE+  +++   T +T +N  V
Sbjct: 82  SIAGGTSESQWEDVTGSTPLTFVNDTV 108


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 509 SSGVNSSLPPRS 474
           +SG+N+SLPP S
Sbjct: 288 TSGINASLPPVS 299


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 509 SSGVNSSLPPRS 474
           +SG+N+SLPP S
Sbjct: 288 TSGINASLPPVS 299


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 199 YHPHQQNNCRWTYHNRRKAGQ 137
           + PH++N     + NRR  GQ
Sbjct: 378 FSPHEENESVDKHPNRRARGQ 398


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 27  FFNIAGGTSETINQN 71
           FF +A GTS   N N
Sbjct: 66  FFGVAPGTSSATNPN 80


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 160 DKSIGNYFVDADGNEFLDAFTQISSQPVGYN 252
           DK I  + +DA  + F  A   +   P+G N
Sbjct: 221 DKGIDGFRIDAVPHLFESANISLDEPPLGKN 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,609
Number of Sequences: 438
Number of extensions: 3700
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)