Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N23
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92826-8|CAI79117.1|  325|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81475-12|CAI79149.1|  325|Caenorhabditis elegans Hypothetical p...    29   2.6  
U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily ass...    28   5.9  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    27   7.9  

>Z92826-8|CAI79117.1|  325|Caenorhabditis elegans Hypothetical
           protein C18D11.7 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 124 ITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFD 285
           I D K ++A    + P  I Y + +K+     HF   ER E  PF +   DT+D
Sbjct: 39  IKDRKFHIAAFFKETP-EIEYQSSVKIWFKDEHFSYYERSEPFPFEEKCEDTYD 91


>Z81475-12|CAI79149.1|  325|Caenorhabditis elegans Hypothetical
           protein C18D11.7 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 124 ITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFD 285
           I D K ++A    + P  I Y + +K+     HF   ER E  PF +   DT+D
Sbjct: 39  IKDRKFHIAAFFKETP-EIEYQSSVKIWFKDEHFSYYERSEPFPFEEKCEDTYD 91


>U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 312 protein.
          Length = 656

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +1

Query: 100 VDNLKSKQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDT 279
           V+NL S   ++ K YL     +   P L D DL+   ++L  D   + E++ F++   DT
Sbjct: 6   VENLFSLCDSESKGYLTMEDLRKVCPQLDDNDLRFIFTELDQDGSGKIEKLEFLRGFQDT 65

Query: 280 FDKYEKNVIDFM 315
               E + ++ M
Sbjct: 66  VQHGESHGLNGM 77


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 425 DTVKRTCLTAPARNGRSRSDFSLKTILDKPSFILSVSIKSI 303
           D  +  C+   AR    R +F +    D PSF +S+ +KSI
Sbjct: 166 DYYENNCVHPTARCPNGRIEFVVTRKADVPSFGISLGVKSI 206


>Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical
           protein M03C11.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 142 YLAGHTSKYPYPILYDTDL-KLKSSKLHFDDKERYERMPFVK 264
           Y+A   S  PYP  + TDL +  +S L FD ++R   +  +K
Sbjct: 242 YVAFRESSIPYPAHWPTDLIQFINSMLKFDKEKRLVGLEAIK 283


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +1

Query: 214 KLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSLLDLPF 387
           K+  + +E + + P +K   + F   +  + DFM +++ +  LS I    K + ++PF
Sbjct: 600 KIKQEIEETWSKYPELKKSLEKFRSNKMKLDDFMISVRTEKNLSQIGSIYKEVSNIPF 657


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,467,051
Number of Sequences: 27780
Number of extensions: 262397
Number of successful extensions: 633
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)