Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N22
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0557 + 4103721-4104616,4105428-4105626                           29   2.2  
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728...    28   5.0  

>02_01_0557 + 4103721-4104616,4105428-4105626
          Length = 364

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 435 VSNIFHCIFNFFKQNLLIFQKNVLMLAL 352
           +S++ +C F    +N++IFQKN ++L L
Sbjct: 147 ISSVGNCGFTPVNENMIIFQKNSILLLL 174


>04_01_0568 -
           7279478-7279590,7279749-7279988,7280078-7280141,
           7280242-7280547,7280643-7280857,7281395-7281689,
           7281906-7281983,7282070-7282705,7283016-7283102,
           7283945-7284265,7285503-7287599
          Length = 1483

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 159 VCFCRVDSGTGGPILTGLFGI*LKLLQVI*ATLILRKQLG 278
           V + +VD+GT    + GL G+ L  LQ++ A ++L   LG
Sbjct: 403 VNYMQVDAGTVSYAMHGLHGLWLMPLQIVVALVLLYAYLG 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,854,495
Number of Sequences: 37544
Number of extensions: 221176
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)