Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N22
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016425-1|AAD34668.1| 458|Caenorhabditis elegans Hypothetical ... 29 2.0
U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav (... 29 2.6
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (... 29 2.6
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein. 29 2.6
AC024831-6|AAY86308.1| 351|Caenorhabditis elegans Hypothetical ... 29 2.6
Z68493-10|CAA92797.2| 329|Caenorhabditis elegans Hypothetical p... 28 3.4
AF039049-12|AAB94245.1| 499|Caenorhabditis elegans Cytochrome p... 28 3.4
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z82276-6|CAJ15166.1| 305|Caenorhabditis elegans Hypothetical pr... 27 6.0
U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF025462-8|AAB71004.1| 121|Caenorhabditis elegans Hypothetical ... 27 7.9
>AF016425-1|AAD34668.1| 458|Caenorhabditis elegans Hypothetical
protein F59A7.1 protein.
Length = 458
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 226 SYMPKSPVKIGPPVPESTRQKQTDD 152
SY P +P PPV STR+ +T+D
Sbjct: 144 SYDPAAPPTFSPPVITSTREPRTED 168
>U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform a protein.
Length = 975
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 233 TPGNLSYFNFTKTTRVLKKKIE*NAQFTGRYLN 331
TP +LSY F K R+ K++ + +FTG +N
Sbjct: 668 TPSDLSYLQFAKGDRIEVIKMQGHNRFTGCLIN 700
>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform b protein.
Length = 1007
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 233 TPGNLSYFNFTKTTRVLKKKIE*NAQFTGRYLN 331
TP +LSY F K R+ K++ + +FTG +N
Sbjct: 700 TPSDLSYLQFAKGDRIEVIKMQGHNRFTGCLIN 732
>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
Length = 1007
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 233 TPGNLSYFNFTKTTRVLKKKIE*NAQFTGRYLN 331
TP +LSY F K R+ K++ + +FTG +N
Sbjct: 700 TPSDLSYLQFAKGDRIEVIKMQGHNRFTGCLIN 732
>AC024831-6|AAY86308.1| 351|Caenorhabditis elegans Hypothetical
protein Y55F3C.10 protein.
Length = 351
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 473 LYFKLAVPAVALAYQIFFTAFLIFLNRTY 387
+YF +A+P + Y IFFT L+F N Y
Sbjct: 155 MYFTVAIPILYTIYSIFFTKPLLF-NSNY 182
>Z68493-10|CAA92797.2| 329|Caenorhabditis elegans Hypothetical
protein C33A12.14 protein.
Length = 329
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -3
Query: 485 KNNNLYFKLAVPAVALAYQIFFTAFLI 405
K N++ ++AVP VAL Y I FT FLI
Sbjct: 146 KINSIVMRIAVP-VALIYPICFTFFLI 171
>AF039049-12|AAB94245.1| 499|Caenorhabditis elegans Cytochrome p450
family protein 35B3 protein.
Length = 499
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -1
Query: 391 PTNFPKKCFDASIKQRYLSQIQIPASKLCILFNFFFQNPSCFRKIKVA*ITWSNFSYMP 215
PT+F +C + I +L+ A+ L FN NP RK + + + Y P
Sbjct: 290 PTHFTMRCLNQVIADLWLAGQDTTATTLVSGFNQLVNNPEVMRKCREEIMKITENGYRP 348
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 289 FFQN---PSCFRKIKVA*ITWSNFSYMPKSPVKIGPPVPESTRQKQTDD 152
FF+N PS + KVA T K PV+I P E+T+ K+ D
Sbjct: 131 FFKNSPAPSASKLPKVAPKTVEKPKTPAKKPVEISPSTKENTKTKKVSD 179
>Z82276-6|CAJ15166.1| 305|Caenorhabditis elegans Hypothetical
protein K03D3.12 protein.
Length = 305
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2
Query: 80 NNLFFYIY---MNVYLIRIPKIRFLSFIVCLFLP 172
NNL+ YI+ + V ++++ I L+ I+ +FLP
Sbjct: 220 NNLYIYIFCLTITVMVVKVIYISLLTVIITIFLP 253
>U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical
protein B0218.2 protein.
Length = 571
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 95 YIYMNVYLIRIPKIRFLSFIVCLFLPGRLGN 187
Y + ++++ +P RFLS I+ +F P RLGN
Sbjct: 400 YTQVVLWMVPVPIQRFLSSIIKVFFP-RLGN 429
>AF025462-8|AAB71004.1| 121|Caenorhabditis elegans Hypothetical
protein K10F12.6 protein.
Length = 121
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Frame = +2
Query: 266 KTTRVLKKKIE*NAQFTGR----YLNL*QISLL--NASIKTFFWK 382
+TT +++ +E + GR + +L Q+ + NA+I+TFFWK
Sbjct: 53 ETTSTMRRSLESRLAWLGRQSYVFRSLKQLETVTHNATIRTFFWK 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,556,801
Number of Sequences: 27780
Number of extensions: 244313
Number of successful extensions: 637
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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