Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N22
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   1.8  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.2  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   5.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.8  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 172 RQKQTDDKT*KSYFWYTYQ 116
           RQ  T  K    Y+WY YQ
Sbjct: 285 RQMTTSRKKVLPYYWYKYQ 303


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 277 GSEKKN*IKCTVYWQVFEFVTN 342
           G E  N + C+V W+V + VTN
Sbjct: 41  GPEAGN-VSCSVSWEVHDPVTN 61


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 92  FYIYMNVYLIRIPKIRFLSFIVC 160
           +YI +   +I++P +R  +F +C
Sbjct: 196 YYISVEWDIIKVPAVRNEAFYIC 218


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 210 VPSK*DHPFPSLPGRNRQTIKLK 142
           VP     PFP+ PG+     K+K
Sbjct: 26  VPQPGRRPFPTFPGQGPFNPKIK 48


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 254 FNFTKTTRVLKKKIE*NAQFTGRYLNL*QISLLNASIKTF 373
           +N T +T +LKK    N+      +     SLLN ++  F
Sbjct: 115 YNITNSTPLLKKLYGGNSTIIFLLIRFKSFSLLNFNLLFF 154


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 184  PESTRQKQTDDKT 146
            P    QKQ+DDKT
Sbjct: 1088 PRKRDQKQSDDKT 1100


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 262 YENN*GSEKKN*IKCTVYWQVFEFVTNI 345
           YEN  GS   +  +C++ W + E    I
Sbjct: 197 YENKNGSVILDTARCSMKWTLIEHAFEI 224


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 69  CNIKITCFFTFI 104
           CN K  C F+F+
Sbjct: 143 CNFKAYCLFSFL 154


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 195 DHPFPSLPGRNRQTIKLKNRI 133
           + P P LPG+  +   LKN++
Sbjct: 24  EEPGPGLPGQEVKQSFLKNQL 44


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 195 DHPFPSLPGRNRQTIKLKNRI 133
           + P P LPG+  +   LKN++
Sbjct: 24  EEPGPGLPGQEVKQSFLKNQL 44


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 195 DHPFPSLPGRNRQTIKLKNRI 133
           + P P LPG+  +   LKN++
Sbjct: 24  EEPGPGLPGQEVKQSFLKNQL 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,226
Number of Sequences: 438
Number of extensions: 3116
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)