Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N21
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    28   0.73 
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    27   1.3  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    25   3.9  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   5.2  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    24   9.0  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 306 ALLLTIHLA--LFSDSFFCWLLFVCKNCSFSH 217
           A+L T H    +F D+FF   L VC  C+F+H
Sbjct: 240 AMLETDHAKNPVFQDNFFRDFLKVCDECNFNH 271


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 133 QNTTDVIALVTRIYKFFPYRVSLNATKEVLTSIN 32
           QN++DVI++++     +  RVS+N T    T++N
Sbjct: 339 QNSSDVISVISFAKSSYTLRVSVNGTVLGTTNVN 372


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +3

Query: 48  TSLVALSDTR*GKNL*IRVTNAMTSVVFC---FDMSSIRWRLSAQR*AIKCILAQYICIY 218
           TSLVAL +   G N  +++ N   S   C   F    +  +L+ +R  +  +L + I +Y
Sbjct: 51  TSLVALVEKDDGNNRKLKLINTKKSTTICELTFPTPLLAVKLNRKR--LLAVLEEQIYVY 108

Query: 219 EKMNSFYKQT--TTS 257
           +  N     T  TTS
Sbjct: 109 DISNMLLLHTIETTS 123


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 284 SLFSRTHSFAGCCLFVKTVHFLIYTYILRKY 192
           S+ SR  +  G  LFV T+  LIY YI  K+
Sbjct: 156 SMASRIRNI-GSALFVLTIFPLIYWYIQHKF 185


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 79  YRVSLNATKEVLTSINEIVHF 17
           + VSLN+ KE L+  N  +HF
Sbjct: 86  FDVSLNSKKEPLSKFNVKIHF 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,667,630
Number of Sequences: 5004
Number of extensions: 30708
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)