Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N21
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    29   1.5  
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/85 (21%), Positives = 40/85 (47%)
 Frame = -1

Query: 429 PLDIP*PRFDRYVY*QHNGAPSNSYVHFHIVFF*SRLTIGCALLLTIHLALFSDSFFCWL 250
           PLDI   R+  +++ +H      S ++FHI      L   C+++ + +  L S   + +L
Sbjct: 62  PLDIHNYRYSFFIFVRHGWFMERSDLNFHI------LVARCSIVASSYAVLLSHFIYRYL 115

Query: 249 LFVCKNCSFSHIYIYTAQVYILLLI 175
           +    + +  H + Y    ++L ++
Sbjct: 116 VISDSSLTRRHFHWYMTGSFLLSVV 140


>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
           protein F33H1.4 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +3

Query: 183 IKCILAQYICIYEKMNSFYKQTTTSKRMSPRKERDEXXXXXXXXXXXXIRKKLCENGHNY 362
           I C L   I +Y+K+ + +  T   + +SP  E +E               K+ ENG  +
Sbjct: 718 ICCGLCGEIVVYDKLLTEHLPTAHPEYLSPGVELEEVPYDSWLKTRLKQESKMMENGFRH 777

Query: 363 YSE 371
           Y +
Sbjct: 778 YDD 780


>Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical
           protein F46B6.5c protein.
          Length = 779

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 HNYYSERHYAVNTRSDRTAV 413
           H  YSE H++ N +SDR ++
Sbjct: 502 HRRYSEAHHSTNVQSDRESI 521


>Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical
           protein F46B6.5a protein.
          Length = 828

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 HNYYSERHYAVNTRSDRTAV 413
           H  YSE H++ N +SDR ++
Sbjct: 502 HRRYSEAHHSTNVQSDRESI 521


>AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical
           protein F19B2.3 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 229 FIFSYIHIYCASIHFIAYL*ALKRHLILDISKQNTT--DVIALVTRIYKFFP 80
           FI S+I I+ +  HF        RHL  ++     T   +I ++  I +FFP
Sbjct: 39  FIISFIGIFPSLFHFWILTRTYMRHLTTNLFLIGITVCGIIHIICNIIEFFP 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,115,712
Number of Sequences: 27780
Number of extensions: 168418
Number of successful extensions: 409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)