Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N19
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    26   2.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   4.7  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   6.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   8.2  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    24   8.2  

>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 132 YNWSMKTLRCVLCGR*PPIALAHISC*FCFRHG 34
           Y +S   +R  LC    P       C FC+RHG
Sbjct: 336 YKYSFYGIRSHLCMEATPSLACANKCTFCWRHG 368


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 386  RDIC*SNVKINYVVKIIHNIYIYMR 312
            +DIC   V+  +V  ++H+I  Y+R
Sbjct: 1357 KDICTKYVQFGHVFNLLHSIISYVR 1381


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 46  AKLTADVRERYWRSSTAEYASQGFHTPIIYFLL 144
           AKL A   +  WR S A   SQ  + P+  F++
Sbjct: 63  AKLNASNGDVIWRQSIAPETSQLNYNPVTNFII 95


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 124 PIIYFLLYNLY-EIITKSSPIKLLPLI 201
           PII FLL+  Y ++I K  P+ L PL+
Sbjct: 246 PIIVFLLFQTYKDLIPKMLPL-LAPLV 271


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 198 DFKVSLYMNSWLYFKHFLIHSV 263
           D+   +++ SW+Y +H+L   +
Sbjct: 284 DYLFGIFVASWVYSRHYLFSKI 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,528,910
Number of Sequences: 5004
Number of extensions: 29229
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)