Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N19
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0293 - 15424397-15428041                                         27   4.6  
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659...    27   4.6  
01_07_0093 + 41045841-41045968,41046068-41046161,41046740-410469...    27   6.0  

>08_02_0293 - 15424397-15428041
          Length = 1214

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 224 IHIQADFEINGNNLMGEL 171
           +H  ADF+++ NNL GE+
Sbjct: 761 LHFLADFDVSNNNLTGEI 778


>06_02_0038 +
           10865068-10865150,10865249-10865335,10865835-10865936,
           10867000-10870078
          Length = 1116

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +2

Query: 59  LMCASAIGGHRPQSTHRRVFILQLYIFYYIT 151
           LM A A G  R  ST   VFIL L +F Y T
Sbjct: 679 LMGAYAAGSSRKFSTSVYVFILVLVVFTYFT 709


>01_07_0093 +
           41045841-41045968,41046068-41046161,41046740-41046925,
           41047035-41047082,41047158-41047343,41047430-41047516,
           41048059-41048145,41048231-41048317
          Length = 300

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
 Frame = -2

Query: 386 RDIC*SNVKINYVVKIIHNIYIYMRSIVFYLYIKY----YFL*NNNTMNQKMLEI*PTIH 219
           R IC S VK      +I + Y+Y     +   ++Y    Y      T+ ++M  +   IH
Sbjct: 172 RGICRSEVKTKLKSAVIQDTYLYYSRKSYEWIVQYPLQDYLAKVQETVQKEMKRL---IH 228

Query: 218 IQADFEINGNNLMGELL---VMISYKLYSKKYIIGV*KPCDAYSAV-DDLQ*RSRTSAVN 51
                E  G+ L  + +   +M +Y+ Y+K+  IG       Y  V DDL  R     ++
Sbjct: 229 YLCISEEEGSGLCLKAVSAPLMQAYENYTKEKHIGGQVLLQTYKTVEDDLLDRCSRLTID 288

Query: 50  FALD 39
             LD
Sbjct: 289 NGLD 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,698,824
Number of Sequences: 37544
Number of extensions: 147571
Number of successful extensions: 248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)