Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N19
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-2|AAA96078.2|  187|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z74042-5|CAA98530.1|  200|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z70687-1|CAA94616.3|  403|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U51998-2|AAA96078.2|  187|Caenorhabditis elegans Hypothetical
           protein C12D12.3 protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 64  VRERYWRSSTAEYASQGFHTPIIYFLLYNLYEIITKSSPIKLL 192
           +R   WR +T ++++QG H  II  LL+ L +I+  +  ++ L
Sbjct: 120 LRLMQWRITTIDHSNQGIH--IIGLLLFMLLQIVYNTIAVQTL 160


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 365  VKINYVVKIIHNIYIYMRSIVFYLYIKY 282
            VK   ++ I  ++ I+++ IVFYLY +Y
Sbjct: 2834 VKYYEMLYIFFSVLIFVKEIVFYLYGRY 2861


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 365  VKINYVVKIIHNIYIYMRSIVFYLYIKY 282
            VK   ++ I  ++ I+++ IVFYLY +Y
Sbjct: 2834 VKYYEMLYIFFSVLIFVKEIVFYLYGRY 2861


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 88  STAEYASQGFHTPIIYFLLYNLYEIITKSSPIKLL 192
           STA +A + F TP    L+Y+  E +TKS  I++L
Sbjct: 382 STALHAPELFKTPKHLKLIYDQLEKMTKSIDIRVL 416


>Z74042-5|CAA98530.1|  200|Caenorhabditis elegans Hypothetical
           protein T11F9.6 protein.
          Length = 200

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 82  RSSTAEYASQGFHTPIIYFLLYNLYEIITKSSPIKLLPLISKSACI 219
           R S  E   + F+  + Y+     ++   K S ++ + LIS   CI
Sbjct: 44  RGSDEERRHKWFNNTVHYYFYEENFDFTVKESILRAMELISNHTCI 89


>Z70687-1|CAA94616.3|  403|Caenorhabditis elegans Hypothetical
           protein T14C1.1 protein.
          Length = 403

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 362 KINYVVKIIHNIYIYMRSIVFYLYIKY 282
           KINY+V + + + ++  S    +YIKY
Sbjct: 320 KINYIVDLSNFLVVFNSSFNIIIYIKY 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,161,559
Number of Sequences: 27780
Number of extensions: 152653
Number of successful extensions: 269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)