Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N18
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.12 
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    30   0.21 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   0.63 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    28   1.1  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   2.5  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   3.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   5.9  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 131 FTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENN 250
           ++GH         +T   NHF+ +GH    +T  +N+ NN
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 340 PPFARQLGNIPSTSHSRVYSPLHLLFIGLFVVLR 239
           P + R+L    S S+SR  SPLH LF+ L + ++
Sbjct: 762 PSYRRRLSMSCSVSYSRSPSPLHALFLALLLGIK 795


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 273 IYCLLDFLLFSVFTNFVTIFLEC 205
           ++CL D+  FS+F+ F+ I LEC
Sbjct: 211 LWCLDDYWYFSLFSMFMIIALEC 233


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 107 NFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKKSNKQ 268
           N + D +    H  K        +  +HFDPS + +K+V+      N K S+ Q
Sbjct: 18  NEEDDDYYSNAHSEKSEDHSNHIK-VSHFDPSSYKQKLVSVRETQRNRKFSSLQ 70


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +2

Query: 92  EYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDPSGHS 211
           +YD++N DH  H    H     +  EA          GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 514 YFGPNAVPVSDLEFLG 561
           YF P+AV V DL+F+G
Sbjct: 357 YFVPSAVAVKDLDFIG 372


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 214 KDRHEVSEYGEQQKVQ*TIDVTVNKHDYGL*KEYY 318
           +D   ++E  E  +++   ++ VN HDY   +E++
Sbjct: 54  QDEFSLTENEENNEIETNEEMHVNSHDYAFPQEFF 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,343
Number of Sequences: 5004
Number of extensions: 46320
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)