Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N18
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846     29   2.6  
06_03_0578 + 22473492-22473784,22473795-22474559,22474673-22475033     28   4.5  
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    27   7.9  

>11_05_0021 - 18438030-18438086,18438120-18438397,18438660-18438846
          Length = 173

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 341 TLWRIPEEAAGRCPAQRSTEHPWRLLLTQGFYIAHHTNRIRCRTRQR 481
           TL  +   A+   P  R   HP RL    G  +AHH    R   R R
Sbjct: 48  TLTALANSASASIPTGRGRTHPLRLDGGSGHQLAHHAVDARALVRAR 94


>06_03_0578 + 22473492-22473784,22473795-22474559,22474673-22475033
          Length = 472

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
 Frame = +2

Query: 20  SSALIVFCTYNLFTNVTMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKREATEHTNHFDP 199
           + +L+++  + L +    SEA   EYD Y     + +      +   KR+  E TN F+ 
Sbjct: 13  AGSLVLYAVFLLLSAAATSEANIGEYDEY--WQKRKLMADAAAEATYKRDPFEVTNSFNR 70

Query: 200 SGHSRKIVTKLVNTENNKKSNKQ*M*R*INTTMACRRNITELPSERRTLWRIP-EEAAGR 376
           + H            +  +S  Q + R          N++E  S RR L     ++ AG 
Sbjct: 71  AVH-----------RHADRSFNQSIVRIAQLVRTYDSNVSEEESGRRELAMTKRKKFAGP 119

Query: 377 CPAQRSTEHPWR 412
           C A    +  WR
Sbjct: 120 CKATNPIDRCWR 131


>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 107 NFDHDKHIFTGHGGKQR--TKREATEHTNH 190
           +FDH  H    HGG++R  +  EA  H +H
Sbjct: 275 HFDHHNHHHPIHGGRERGSSPAEADHHRHH 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,239
Number of Sequences: 37544
Number of extensions: 305488
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)