Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N18
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   0.70 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   0.70 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.5  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   6.5  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   6.5  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   8.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.6  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 32  IVFCTYNLFTNVTMSEAFFDEYDYYNFD 115
           IV    +L T     E + D+YDY N D
Sbjct: 6   IVILILSLLTWTYAEELYSDKYDYVNID 33


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 32  IVFCTYNLFTNVTMSEAFFDEYDYYNFD 115
           IV    +L T     E + D+YDY N D
Sbjct: 6   IVILILSLLTWTYAEELYSDKYDYVNID 33


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +3

Query: 165 GRPPNTRITSTPLDILEXXXXXXXXXXTTKSPINN 269
           G P NTR   TP + LE             +PI N
Sbjct: 140 GNPWNTRYCLTPTERLEALCWTQDEDVICSTPIGN 174


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +3

Query: 165 GRPPNTRITSTPLDILEXXXXXXXXXXTTKSPINN 269
           G P NTR   TP + LE             +PI N
Sbjct: 193 GNPWNTRYCLTPTERLEALCWTQDEDIICSTPIGN 227


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 526 WDQNRLSKVTPGLF*ALPRSTSYSV 452
           W+QNR  ++T   F   P +  Y++
Sbjct: 222 WEQNRSWRITHSYFMPDPLAGDYNI 246


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 462 DVERGNA*NKPGVT 503
           DV++GN  N+P +T
Sbjct: 58  DVDKGNLVNEPSIT 71


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 462 DVERGNA*NKPGVT 503
           DV++GN  N+P +T
Sbjct: 58  DVDKGNLVNEPSIT 71


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +2

Query: 149 KQRTKREATEHTNHFDPSGHSRKIVTKLVNTENNKKSNKQ 268
           + R KRE          S  S   ++ + N  NN   NK+
Sbjct: 66  RSRDKRERERSKERKIISSLSNNYISNISNYNNNNNYNKK 105


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 375 RPAASSGIRHNVLLSLGNSVIFLLQAI 295
           RP+   G++ +VL+ +  +  +LLQ I
Sbjct: 121 RPSKKEGLQFDVLVKVDMTRQYLLQLI 147


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 375 RPAASSGIRHNVLLSLGNSVIFLL 304
           RP   SGI    ++S  N  +F+L
Sbjct: 847 RPIVQSGIFGKYMVSPSNDALFVL 870


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,318
Number of Sequences: 438
Number of extensions: 3296
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)