Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N17
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   222   2e-59
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    30   0.22 
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    29   0.52 
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   0.91 
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.6  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   4.8  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   4.8  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.4  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  222 bits (543), Expect = 2e-59
 Identities = 108/151 (71%), Positives = 124/151 (82%)
 Frame = +1

Query: 7   VGRMHAPGKGISQSALPYRRSVLPG*N*PLMIVKEQIFKLGKKGLTPSQIGVMLRDSHGV 186
           +GRMH+ GKGI+ SALPY RS           V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 187 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 366
            QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61  PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120

Query: 367 RIHRLARYYKTKSVLPPNWKYESSTASALVA 459
           RIHRLARYY+    LPP WKYES+TASALVA
Sbjct: 121 RIHRLARYYRKVGALPPTWKYESATASALVA 151


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +1

Query: 193 VRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 372
           +R    KK+   +KA G      EDL +L    +   +  +  +++K    RL ++  RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682

Query: 373 HRLARYYKTKSVLPPNWKYES 435
             L R Y+ +++  P W+ ++
Sbjct: 683 DHLERAYRREAI--PLWEEDA 701


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 7   VGRMHAPGKGISQSALPYRRSVLPG*N*PLMIVKEQIFKLGKKGLTP 147
           VG M     GI  S  P+RRS+L   +  L +  ++I    + GLTP
Sbjct: 425 VGAMFGATLGIKDSDAPHRRSILIVGDGSLHLTVQEISATIRNGLTP 471


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 304 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 405
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +1

Query: 211 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 390
           KKI+ I     L      D YYL KKA  + +    N  +K+SK   I +E +  +    
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241

Query: 391 YKTKSVLPPNW 423
              +  L  +W
Sbjct: 242 VNLEKYLTKSW 252


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 334 PCPSYYVPNVSSWRQPS*SGSTNLPVDQEQ 245
           P PSY+ P  S   Q   +GST L  D +Q
Sbjct: 338 PAPSYFSPGSSFGAQLCANGSTLLRADTKQ 367


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 208 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 333
           G+ + ++  A  +    PE+L+  +KK+ + +K   +  K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 115 SVP*LSSAVSFNQVGHCDGTAAPTGIYPCQVRAYD 11
           + P  S+A   +     D    PT IYP  VRA D
Sbjct: 373 ATPGSSNAPVVDMHPSADSATYPTSIYPSNVRARD 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,536
Number of Sequences: 5004
Number of extensions: 39582
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)