Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N17
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 198 3e-51
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 176 9e-45
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 175 2e-44
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 143 6e-35
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353... 29 1.6
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 29 2.1
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568... 29 2.1
04_03_0140 - 11736496-11736702,11737950-11738456 29 2.1
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 2.8
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078... 27 6.4
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 27 8.5
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 8.5
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 198 bits (482), Expect = 3e-51
Identities = 96/140 (68%), Positives = 110/140 (78%)
Frame = +1
Query: 7 VGRMHAPGKGISQSALPYRRSVLPG*N*PLMIVKEQIFKLGKKGLTPSQIGVMLRDSHGV 186
+GRMH+ GKGIS SA+PY+R+ V+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 187 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 366
V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 367 RIHRLARYYKTKSVLPPNWK 426
RIHRLARYYK LPP WK
Sbjct: 121 RIHRLARYYKRTKKLPPTWK 140
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 176 bits (428), Expect = 9e-45
Identities = 85/140 (60%), Positives = 106/140 (75%)
Frame = +1
Query: 7 VGRMHAPGKGISQSALPYRRSVLPG*N*PLMIVKEQIFKLGKKGLTPSQIGVMLRDSHGV 186
+GRMH+ GKG+S S LPYRR+ V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 187 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 366
+ VTG KILR++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVES
Sbjct: 61 PLAQGVTGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVES 120
Query: 367 RIHRLARYYKTKSVLPPNWK 426
R+HRL RYY+ +P +K
Sbjct: 121 RVHRLTRYYRLAKKIPAFFK 140
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 175 bits (425), Expect = 2e-44
Identities = 82/109 (75%), Positives = 92/109 (84%)
Frame = +1
Query: 100 IVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 279
+V+E I K KKG PSQIGV+LRD HG+ V+ VTG KILRI+KA GLAP++PEDLY+L
Sbjct: 71 LVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFL 130
Query: 280 IKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 426
IKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK LPP WK
Sbjct: 131 IKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK 179
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 143 bits (347), Expect = 6e-35
Identities = 70/105 (66%), Positives = 79/105 (75%)
Frame = +1
Query: 103 VKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLI 282
V+E I K K G SQIGV+LR HG+ V+ + KIL I+KA GLAP + EDLY+LI
Sbjct: 90 VEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFLI 149
Query: 283 KKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPP 417
KKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK LPP
Sbjct: 150 KKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194
>11_06_0295 +
22033367-22034947,22035030-22035137,22035230-22035370,
22035576-22035625,22036100-22036168,22036649-22036781,
22037634-22037747,22037826-22038038,22038387-22038500,
22038768-22038900,22039304-22039416,22040204-22040284,
22040397-22040483
Length = 978
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = -2
Query: 324 PITFQMFPHGDSLLDQVVQIFR*IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGR 145
P +FQ+ +G D IF H H+T TS K++LC T+ V L
Sbjct: 749 PASFQLRHNGSCFSDIFYDIFSAWEKNDH--HETYYSLTSLKNNLCQTVNVRNIFEKLRA 806
Query: 144 SKTLFAKFEDLFLN 103
K + DL L+
Sbjct: 807 GKYFASVILDLVLD 820
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 272 YKSSGRSGARPIAFMIRRIFLPVTNLTCA 186
Y GR G RP+A M+ R V N TCA
Sbjct: 400 YNVPGRDGYRPVARMLARHDGAVLNFTCA 428
>04_04_1209 +
31755637-31755821,31756017-31756165,31756703-31756845,
31756902-31757024
Length = 199
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = +1
Query: 214 KILRIMKAMGL-APD--LPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE----SRI 372
KI R+++A+ A D LP +L ++ AV MR R+RK+KD++ ++++E R
Sbjct: 105 KITRVLRAVHTGAHDRRLPGNLDKTVRVAV-MRPKTSRSRKEKDAEEEVLVIEGIERERE 163
Query: 373 HRLARY 390
HR Y
Sbjct: 164 HRGGEY 169
>04_03_0140 - 11736496-11736702,11737950-11738456
Length = 237
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 3 RGGSYARTWQGYIPVGAAVPSQCPTWLKLTA 95
RGG + R W G +P A CP+ L+LTA
Sbjct: 15 RGGVHHRRWDGVVPPECA---PCPSVLRLTA 42
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -2
Query: 255 IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNYHQRLVSTR 76
+ +K + Q L + D N VP+ +G +TL A+ EDL L Y++ + +
Sbjct: 338 LENKIKAMKQEQTLLSLEAHDCANA--VPDLSKMIGAVQTLVAQCEDLKLKYYEEMAKRK 395
>08_02_1332 +
26207164-26207257,26207454-26207530,26207771-26207841,
26208448-26208502,26209066-26209187,26209272-26209353,
26210070-26210160,26210759-26210982,26211294-26211413,
26211523-26211705
Length = 372
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 69 TATVRQRRLGYTLARCVHTTHL 4
TA RQ+ + YT C HT+HL
Sbjct: 93 TAAGRQKPVLYTFINCCHTSHL 114
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -2
Query: 297 GDSLLDQVVQIFR*IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKF 121
GD L V++ + + T + QDL KS L + +HDTD R K K+
Sbjct: 40 GDKLAPLVIREYSSLMGVTKDLQELQDLVEEIKSGL----QSEKHDTDNDRDKYAVLKY 94
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 253 DLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 351
DLPE L++ AVA R LE++R D+ FR+
Sbjct: 24 DLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,484,461
Number of Sequences: 37544
Number of extensions: 269002
Number of successful extensions: 651
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -