Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N17
         (502 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles ...   252   5e-69
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   4.4  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   4.4  

>U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S13 mRNA, complete
           cds. ).
          Length = 151

 Score =  252 bits (617), Expect = 5e-69
 Identities = 122/151 (80%), Positives = 135/151 (89%)
 Frame = +1

Query: 7   VGRMHAPGKGISQSALPYRRSVLPG*N*PLMIVKEQIFKLGKKGLTPSQIGVMLRDSHGV 186
           +GRMHAPGKGIS+SALPYRRSV          VKEQI KLGKKG+TPSQIG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISKSALPYRRSVPSWLKLSAEDVKEQIKKLGKKGMTPSQIGIILRDSHGV 60

Query: 187 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 366
           AQVRFV G K+LRIMKA+GL PD+PEDLY+LIKKAV++RKHLERNRKD DSKFRLIL+ES
Sbjct: 61  AQVRFVNGNKVLRIMKAVGLKPDIPEDLYFLIKKAVSIRKHLERNRKDIDSKFRLILIES 120

Query: 367 RIHRLARYYKTKSVLPPNWKYESSTASALVA 459
           RIHRLARYYK K+VLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKIKAVLPPNWKYESSTASALVA 151


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 GVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 288
           G++ V+F+T ++   I  +MG+   L  D  Y+ ++
Sbjct: 443 GMSTVKFITYQEASEISGSMGVGWSLQVDCVYIDRR 478


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 GVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 288
           G++ V+F+T ++   I  +MG+   L  D  Y+ ++
Sbjct: 444 GMSTVKFITYQEASEISGSMGVGWSLQVDCVYIDRR 479


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,597
Number of Sequences: 2352
Number of extensions: 9719
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44823054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)