Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N17
(502 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal prote... 219 1e-57
Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z95559-18|CAB09001.2| 113|Caenorhabditis elegans Hypothetical p... 27 7.6
Z70309-1|CAA94355.1| 133|Caenorhabditis elegans Hypothetical pr... 27 7.6
U70858-2|AAK68881.1| 177|Caenorhabditis elegans Odorant respons... 27 7.6
AF324051-1|AAK01412.1| 177|Caenorhabditis elegans Ly-6-related ... 27 7.6
>U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 13 protein.
Length = 151
Score = 219 bits (534), Expect = 1e-57
Identities = 104/151 (68%), Positives = 126/151 (83%)
Frame = +1
Query: 7 VGRMHAPGKGISQSALPYRRSVLPG*N*PLMIVKEQIFKLGKKGLTPSQIGVMLRDSHGV 186
+GRMH PGKG+++SA+PYRRSV V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1 MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60
Query: 187 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 366
QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVES
Sbjct: 61 GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120
Query: 367 RIHRLARYYKTKSVLPPNWKYESSTASALVA 459
RIHRLARYYKTK LPP WKYES TA++LV+
Sbjct: 121 RIHRLARYYKTKRQLPPTWKYESGTAASLVS 151
>Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical
protein D2085.3 protein.
Length = 666
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 168 EHDTDLGRSKTLFAKFEDLFLNYHQ 94
+H+ D + K L K++ LFLNY++
Sbjct: 541 KHNQDFNKMKELIVKWQPLFLNYYK 565
>Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 91 PLMI-VKEQIFKLGKKGLTPSQIGVMLRDSHG 183
PL I V+ I + KKG+ P I L+ SHG
Sbjct: 29 PLPIHVRHAIISMAKKGIKPCHISRQLKVSHG 60
>Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 91 PLMI-VKEQIFKLGKKGLTPSQIGVMLRDSHG 183
PL I V+ I + KKG+ P I L+ SHG
Sbjct: 29 PLPIHVRHAIISMAKKGIKPCHISRQLKVSHG 60
>Z95559-18|CAB09001.2| 113|Caenorhabditis elegans Hypothetical
protein Y41E3.6 protein.
Length = 113
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +3
Query: 9 GSYARTWQGYIPVGAAVPSQCPTWLKLTADDS*GTDLQTWQK--GSYSFPNRC 161
G + T P+G V +C K+ + D G L W K G++ N C
Sbjct: 52 GEFNITIDEITPIGDVVIERCTIHAKVASGDKTGWSLCVWVKDGGAWKIRNSC 104
>Z70309-1|CAA94355.1| 133|Caenorhabditis elegans Hypothetical
protein R102.1 protein.
Length = 133
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +3
Query: 9 GSYARTWQGYIPVGAAVPSQCPTWLKLTADDS*GTDLQTWQK--GSYSFPNRC 161
G + T P+G V +C K+ + D G L W K G++ N C
Sbjct: 72 GEFNITIDEITPIGDVVIERCTIHAKVASGDKTGWSLCVWVKDGGAWKIRNSC 124
>U70858-2|AAK68881.1| 177|Caenorhabditis elegans Odorant response
abnormal protein2, isoform b protein.
Length = 177
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -2
Query: 348 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTH-SFH--DTQDLFTSNKSDLCNT 181
PE A L LP M P+ + + ++R S TH H +T L++ N SD+C T
Sbjct: 22 PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81
Query: 180 MRV 172
+R+
Sbjct: 82 LRI 84
>AF324051-1|AAK01412.1| 177|Caenorhabditis elegans Ly-6-related
protein ODR-2 isoform16 protein.
Length = 177
Score = 27.1 bits (57), Expect = 7.6
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -2
Query: 348 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTH-SFH--DTQDLFTSNKSDLCNT 181
PE A L LP M P+ + + ++R S TH H +T L++ N SD+C T
Sbjct: 22 PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81
Query: 180 MRV 172
+R+
Sbjct: 82 LRI 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,157,659
Number of Sequences: 27780
Number of extensions: 225007
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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