Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N16
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 220 1e-58
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 33 0.037
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.4
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 3.2
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 4.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.3
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 7.5
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 220 bits (537), Expect = 1e-58
Identities = 107/140 (76%), Positives = 121/140 (86%)
Frame = +1
Query: 136 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELY 315
ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKIRY+SL+DP LD+ K+L+
Sbjct: 5 ETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLF 64
Query: 316 IKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVG 495
I+I P+K L+I DTGIGMTK DL+NNLG IAKSGTK FMEA +GADISMIGQFGVG
Sbjct: 65 IRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADISMIGQFGVG 124
Query: 496 FYSCYLVADRVTVHSKHNDD 555
FYS YLVAD+V V SKHNDD
Sbjct: 125 FYSAYLVADKVQVVSKHNDD 144
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 32.7 bits (71), Expect = 0.037
Identities = 23/94 (24%), Positives = 41/94 (43%)
Frame = +1
Query: 127 GEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 306
G+ + AEI L +N + R++++N L KI DPSK
Sbjct: 2424 GDQKCLTTLAEIGPLSPFKFTDASNNTKFISRDIVANG---LSKILILKDYDPSKAVRKP 2480
Query: 307 ELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLG 408
++Y K+ + + L D+GI ++ L+ +G
Sbjct: 2481 KIYSKVSTEERDFNLEQFDSGIDLSVKFLLEGIG 2514
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 184 INTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELYIK 321
+N S +EI L++ I + D I+Y S S ++ +Y+K
Sbjct: 377 LNEQISKEEIDLQKKIEKRNSTYDLIKYRSRVHTSLIEERNSIYLK 422
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.4
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = -3
Query: 437 KALVPDFAMVPRLLTKSALVMPIPVSMIVSVPSFLLGIIFMYNSLPLSNFDGS 279
KA++P F + +AL+ PI ++ I S +F+ I + S PLS+FDGS
Sbjct: 486 KAVIPIFTNQVSYIN-NALIRPI-IAYINSTRTFIP--ILCHVSKPLSDFDGS 534
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +3
Query: 402 PGYHC-KIWHQGFH--GGPAGRCRHKYDRS 482
PGY C K + G+ G P GRC ++ RS
Sbjct: 139 PGYMCYKCHNTGYKDSGRPCGRCARRFGRS 168
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 126 WRGGNLRLPSGNRSAHVIDHQH 191
WRG N PS N SA QH
Sbjct: 106 WRGDNTSKPSANSSAERTSSQH 127
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 4.3
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +1
Query: 214 FLRELISNSSDALDKIRYESL 276
F+R+++ +D L+K+R++SL
Sbjct: 224 FIRKVVLTKADGLEKLRFQSL 244
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/85 (22%), Positives = 36/85 (42%)
Frame = -3
Query: 476 IILMSAPACRASMKALVPDFAMVPRLLTKSALVMPIPVSMIVSVPSFLLGIIFMYNSLPL 297
+ L++A + + + A + D A P +L + P + + SVP+ L YN
Sbjct: 9 LFLLAAQSLNSGVSASLSDPANTPTILADDIVHGYTPATYLSSVPTLLKRATTSYNYNTS 68
Query: 296 SNFDGSVRDS*RILSNASDEFEISS 222
S S+ S S+ + ++S
Sbjct: 69 SASSSSLTSSSAASSSLTSSSSLAS 93
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 169 LMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDS 300
L+++ +++ + E +L+ L +D LD++ ES PSK S
Sbjct: 63 LLNIPMSSLQTELEKYLKPLPPAINDELDRLANESQDIPSKFKS 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,637
Number of Sequences: 5004
Number of extensions: 44295
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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