Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N13
(397 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 27 0.80
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 27 1.1
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 27 1.4
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 26 2.4
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 25 3.2
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 25 4.3
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 5.6
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 25 5.6
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 25 5.6
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 24 7.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 24 7.4
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 7.4
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 24 7.4
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 24 9.8
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.8
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 24 9.8
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 24 9.8
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.5 bits (58), Expect = 0.80
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 233 GLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKVVSPTVVESATA 391
GL +L + S ++ N++ Q+ P K Q+G + + PT++ SA A
Sbjct: 352 GLYKLSP-ELTASFNKFFNANKQFQPDKDERIQQEGPVEQRPLCPTLIGSAGA 403
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 1.1
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +2
Query: 179 TVILIPPKNLKDPNRYSRGLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKV 358
T ++ P N L L VD +STS S S +P ++ + D G +
Sbjct: 320 TPSVLTPANTIQRGLLPSKLPALSDVDENISTSSSPRSPASLAPVNNSERSYDSGLGESL 379
Query: 359 VSPTVVES-ATA 391
+ + +S ATA
Sbjct: 380 NNMHIGKSIATA 391
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 281 SQNSSPQYSPSKTNDAAQDGGASHKVVSPTVVESATA 391
SQN+ + PS ++ A +K V+P V++S +A
Sbjct: 115 SQNAQRHHEPSFNSEKASYTSTPYKNVAPKVIDSPSA 151
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 231 RLYRFGSFRFFGGIKMTVEYLKQL-LYIIFF 142
R Y F +FR F + EYLK L Y++ F
Sbjct: 348 RTYYFVTFRSFNQLPSNSEYLKPLNFYLVVF 378
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 3.2
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 125 HCQCQPKKMI*RSCLRYSTVIL-IPPKNLKDPNRYSRGLQQLQTVDAEVSTSESQNSSPQ 301
HCQ + R + VI IP LK + S ++Q EV + E + S+P
Sbjct: 12 HCQFSSWYSLFRKLTPKAKVIKPIPATVLKYLHEDSIYVEQPMNTVEEVDSEEDEESAPA 71
Query: 302 YSPSK 316
Y P +
Sbjct: 72 YYPER 76
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/57 (19%), Positives = 26/57 (45%)
Frame = +2
Query: 110 RSNYQHCQCQPKKMI*RSCLRYSTVILIPPKNLKDPNRYSRGLQQLQTVDAEVSTSE 280
R++Y+H + + + SC R ++ + +PN +Q V+ +++ E
Sbjct: 233 RTDYEHYRDPLSQTLITSCTRIHNIVAVIESPYDEPNTKGLTSEQKMIVECQLNPGE 289
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 24.6 bits (51), Expect = 5.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 88 DQQLTGLEKQLSALSVSAKEDDIKELLEIFYCHFDPTKEPKGPKPIQPRSSATANG 255
++++ E++LSAL + D+KE+ C + K + R+ TANG
Sbjct: 767 EEKIKSFEEKLSALKKEMSDVDLKEIKS---CLLSSESFKEYTKKMHFRAITTANG 819
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 5.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 297 HNTHPARLMMPHKTXGLV 350
H PA+ ++PHKT LV
Sbjct: 274 HLNKPAKTLVPHKTQSLV 291
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 24.6 bits (51), Expect = 5.6
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 203 NLKDPNRYSRGLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKVVSPTVVES 382
+ DP +S G+ + + TS + +S+P + S N V +PT+V S
Sbjct: 138 SFSDPKAFSAGVPKFTS-----DTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSS 192
Query: 383 A 385
A
Sbjct: 193 A 193
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 24.2 bits (50), Expect = 7.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 197 PKNLKDPNRYSRGLQQLQTVDAEVSTSESQNSSPQYSPS 313
P L D N+ S L T+DA+ + + + S+P S S
Sbjct: 151 PSPLLD-NQPSSDLSNFNTIDADYNNASASTSAPATSAS 188
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.2 bits (50), Expect = 7.4
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 16 RVTQLRRLLADAGLL-YDQLKDAWLDQQLTGLEKQLSALSVSAKEDDIKELLEIFY 180
R +QL+ +L + + +DQ++ L K S + + K+D+I +++FY
Sbjct: 1681 RHSQLKSMLRNGRMSDHDQIQPFLLSNTFDDFVKISSLMLIFGKQDNILYYVKLFY 1736
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 61 YDQLKDAWLDQQLTGLEKQLS 123
Y ++ + D+ L GLEKQLS
Sbjct: 16 YSKVGSRFSDESLNGLEKQLS 36
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 24.2 bits (50), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 218 NRYSRGLQQLQTVDAEVSTSESQNSSPQYSPSKT 319
N YSR LQ T + + Q S+P+ P+KT
Sbjct: 532 NPYSRPLQSQST---GILQQQQQQSAPRLEPTKT 562
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 23.8 bits (49), Expect = 9.8
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +1
Query: 31 RRLLADAGLLYDQLKDAWLDQQLTGLEKQLSALSVSAKEDDIKELLEIFYCHFDPTKE 204
+ LL D + + Q L+++ L ++ ++V +KE+D++ ++ F C P +E
Sbjct: 740 KNLLIDTIISHLQSSTIHLNEESVCLLSRI--IAVISKEEDLELIINSFTCAQKPVEE 795
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 67 QLKDAWLDQQLTGLEKQLSALSVSAKEDDI 156
QLK L+ Q+ L+KQL S + D+
Sbjct: 365 QLKIKQLETQIATLQKQLEQFQTSTLDQDL 394
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 23.8 bits (49), Expect = 9.8
Identities = 16/79 (20%), Positives = 30/79 (37%)
Frame = +2
Query: 146 KMI*RSCLRYSTVILIPPKNLKDPNRYSRGLQQLQTVDAEVSTSESQNSSPQYSPSKTND 325
KM+ +R I PK L N Q++ T E S + + + ++ +
Sbjct: 446 KMVLNDFMRGKIPWFIGPKGLSSSNDEINSSQKVATQQTEGSDQDGEEAEEEWHGISDDG 505
Query: 326 AAQDGGASHKVVSPTVVES 382
A + ++ V + ES
Sbjct: 506 KADESESTKPVAEGSASES 524
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 37 LLADAGLLYDQLKDAWLDQQLTGLEKQLSALSVSAKED 150
+L + L +++ + ++ QLT L+KQL +L+ K D
Sbjct: 365 VLEEIQSLLKEVEISEINTQLTALKKQLDSLTHCCKTD 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,327,129
Number of Sequences: 5004
Number of extensions: 23335
Number of successful extensions: 85
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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