Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N13
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1742 + 29160954-29161019,29161425-29161508,29161595-291616... 31 0.44
02_04_0408 + 22655454-22655520,22656055-22656356 29 1.0
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 28 2.4
03_02_0813 - 11446138-11446155,11446782-11447027,11447172-114474... 28 2.4
01_01_1229 + 9932535-9932594,9933018-9933095,9933177-9933228,993... 28 3.1
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 27 5.5
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 27 5.5
06_01_1077 - 8796951-8797097,8797185-8797442,8797541-8797812,879... 27 5.5
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 27 7.2
01_06_1073 - 34300089-34300235,34300783-34301031,34302509-343027... 27 7.2
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 27 7.2
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 26 9.6
09_03_0109 + 12430601-12431080 26 9.6
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 26 9.6
>07_03_1742 +
29160954-29161019,29161425-29161508,29161595-29161654,
29161915-29161992,29162088-29162139,29162276-29162547,
29162646-29162912
Length = 292
Score = 30.7 bits (66), Expect = 0.44
Identities = 13/63 (20%), Positives = 31/63 (49%)
Frame = +1
Query: 25 QLRRLLADAGLLYDQLKDAWLDQQLTGLEKQLSALSVSAKEDDIKELLEIFYCHFDPTKE 204
Q + + L +D WL++Q + + +A++ A + D++ +++ H+D +
Sbjct: 106 QTHAMSGNGALTFDLEYTRWLEEQNKQINELRTAVNAHASDSDLRLIVDGIMAHYDEVFK 165
Query: 205 PKG 213
KG
Sbjct: 166 VKG 168
>02_04_0408 + 22655454-22655520,22656055-22656356
Length = 122
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 260 AEVSTSESQNSSPQYSPSKTNDAAQDGGAS 349
A ++TSE+ NS P Y P+ Q GG+S
Sbjct: 17 AFLATSEAANSQPTYPPANGGSDGQAGGSS 46
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 2 HEGASESRSCADCWRTQGYSTTSSRTP 82
++G E C C R GYS S+R P
Sbjct: 240 YQGCYEGCRCGGCGRVYGYSVPSARPP 266
>03_02_0813 -
11446138-11446155,11446782-11447027,11447172-11447443,
11447544-11447595,11447700-11447777,11448860-11448919,
11449006-11449086,11449601-11449645,11450118-11450183
Length = 305
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/63 (19%), Positives = 30/63 (47%)
Frame = +1
Query: 25 QLRRLLADAGLLYDQLKDAWLDQQLTGLEKQLSALSVSAKEDDIKELLEIFYCHFDPTKE 204
Q + + + +D WL++Q + + +A++ A + D++ +++ H+D
Sbjct: 120 QTHAMSGNGAMTFDLEYARWLEEQNKQINELRTAVNAHASDSDLRLIVDGIMAHYDEIFR 179
Query: 205 PKG 213
KG
Sbjct: 180 LKG 182
>01_01_1229 +
9932535-9932594,9933018-9933095,9933177-9933228,
9933377-9933648,9934016-9934246,9934408-9934554
Length = 279
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/65 (18%), Positives = 32/65 (49%)
Frame = +1
Query: 19 VTQLRRLLADAGLLYDQLKDAWLDQQLTGLEKQLSALSVSAKEDDIKELLEIFYCHFDPT 198
V Q + + L +D WL++ + + SA++ A +++++ +++ H++
Sbjct: 54 VDQTHSMSGNGALAFDMEYARWLEEHNRQINELRSAVNAHAGDNELRGVVDKIMSHYEEI 113
Query: 199 KEPKG 213
+ KG
Sbjct: 114 FKQKG 118
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 269 STSESQNSSPQYSPSKTNDAAQDGGASHKVVSPTV 373
S S S+ +P+ +D D GA+H VV+ T+
Sbjct: 124 SRSSGSESNMDDAPTSGSDPEMDNGATHPVVTATL 158
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 221 RYSRGLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKVVSPT 370
RY + + D+ S S +QNS P GG S +SPT
Sbjct: 139 RYLEAVNGIVRKDSVASLSSTQNSDGGPPPPAPTSGGGGGGGSPTALSPT 188
>06_01_1077 -
8796951-8797097,8797185-8797442,8797541-8797812,
8797907-8797967,8798082-8798159,8798380-8798439,
8798543-8798629,8798717-8798941,8799003-8799091,
8799137-8799251
Length = 463
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 55 LLYDQLKDAWLDQQLTGLEKQLSALSVSAKEDDIKELLEIFYCHFD 192
L +D WLD+ + AL+ +D++ EL++ H+D
Sbjct: 241 LAFDLEYARWLDEHQRHINDLRVALNAQMSDDELCELVDAVMMHYD 286
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 266 VSTSESQNSSPQYSPSKTNDAAQDGGAS 349
+ T+ QN SPQ PS + A DG A+
Sbjct: 774 LQTTPDQNPSPQTRPSVASAAGDDGEAA 801
>01_06_1073 -
34300089-34300235,34300783-34301031,34302509-34302780,
34303131-34303182,34303272-34303349,34303659-34303718,
34303801-34303875,34304382-34304585,34304694-34304767,
34304992-34305095,34305261-34305334,34305407-34305473,
34306024-34306127
Length = 519
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/56 (19%), Positives = 28/56 (50%)
Frame = +1
Query: 46 DAGLLYDQLKDAWLDQQLTGLEKQLSALSVSAKEDDIKELLEIFYCHFDPTKEPKG 213
+ L +D WL++ + + +A++ A ++D+K ++ H++ + KG
Sbjct: 297 NGALAFDMEYARWLEEHNKHINELRAAVNAHAGDNDLKSTVDSIMAHYNEIFKLKG 352
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 157 KELLEIFYCHFDPTKEPKGPKPIQPRSSATANG*CR 264
KEL++ + + P +EPK P+P P CR
Sbjct: 205 KELIDFYMKYSIPLQEPKEPEPEYPFDDLQETKPCR 240
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +1
Query: 10 RKRVTQLRRLLADAGLLYD-QLKDAWLDQQLTGLEKQLSALSVSAKEDDIKELL 168
+K+ Q +++ G + Q K+ + +++TGLEK+L L+V +E++++E L
Sbjct: 712 KKKKNQYESEMSELGSPRELQRKELAVSEKITGLEKKLHYLNV--EENNLREKL 763
>09_03_0109 + 12430601-12431080
Length = 159
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 2 HEGASESRSCADCWRTQGYSTTSSRTPGWISN 97
H G E R C C + G S T + PG+ N
Sbjct: 44 HSGLCELRRCWLCGPSAGKSETFAEVPGYPDN 75
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/67 (20%), Positives = 26/67 (38%)
Frame = +2
Query: 194 PPKNLKDPNRYSRGLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKVVSPTV 373
P K +KD + E+S+ + + S D Q + KV +P
Sbjct: 338 PQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDDSSDESSDEDVKQKQTQAKKVQAPVA 397
Query: 374 VESATAN 394
ES++++
Sbjct: 398 QESSSSD 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,069,081
Number of Sequences: 37544
Number of extensions: 162685
Number of successful extensions: 624
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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