Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N13
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71261-1|CAA95801.2|  437|Caenorhabditis elegans Hypothetical pr...    31   0.23 
AC024785-4|AAF60602.3|  466|Caenorhabditis elegans C-type lectin...    31   0.30 
AF067613-12|AAN73861.1|  467|Caenorhabditis elegans Hypothetical...    31   0.40 
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    30   0.69 
Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    28   2.1  
AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical...    28   2.8  
AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical...    28   2.8  
Z69634-9|CAO82013.1|  575|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z69634-8|CAA93452.4|  591|Caenorhabditis elegans Hypothetical pr...    27   6.4  
L14331-8|AAA28100.1|  586|Caenorhabditis elegans C.elegans homeo...    27   6.4  
AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical...    27   6.4  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    26   8.5  
Z74030-10|CAA98439.1|  317|Caenorhabditis elegans Hypothetical p...    26   8.5  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z71261-1|CAA95801.2|  437|Caenorhabditis elegans Hypothetical
           protein F21C3.1 protein.
          Length = 437

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 65  TSSRTPGWISN*-QV*RSNYQHCQCQPKKMI*RSCLRYSTVILI 193
           T  + P W+     V R  +Q  +C PKKM+ R  +  ST +LI
Sbjct: 30  TKKQLPSWLDRPYHVWRDQFQQDKCCPKKMVKRELMFASTYVLI 73


>AC024785-4|AAF60602.3|  466|Caenorhabditis elegans C-type lectin
           protein 72 protein.
          Length = 466

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 175 FYCHFDPTKEPKGPKPIQPRSSATANG*CR 264
           F C +DPT +P  PK   P ++  AN  C+
Sbjct: 141 FVCSYDPTVQPVTPKATTPTTTTAANVNCQ 170


>AF067613-12|AAN73861.1|  467|Caenorhabditis elegans Hypothetical
           protein F56D6.2 protein.
          Length = 467

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 175 FYCHFDPTKEPKGPKPIQPRSSATANG*C 261
           F C +DPT +P  PK   P ++  AN  C
Sbjct: 141 FVCSYDPTVQPVTPKATTPTTTTAANVNC 169


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +2

Query: 251 TVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKVVSPTVVESAT 388
           TV    STSES  SSP    S ++  +Q   AS    + TV ES+T
Sbjct: 358 TVPTSASTSESSTSSPMAETSSSSTTSQSSPAS----TSTVPESST 399


>Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical
           protein D1054.9b protein.
          Length = 559

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 46  DAGLLYDQLKDAWLDQQL-TGLEKQLSALSVSAKEDDIKELLEIFYCHFDPTKEPKGPKP 222
           D  L+ +QLK+ W  QQL TGL++ + A+  SA+             HF+   +P  P+P
Sbjct: 452 DVRLMGNQLKNTW--QQLRTGLDRGVKAVRQSAESS---------VTHFNYGPQPPQPQP 500

Query: 223 IQ 228
           +Q
Sbjct: 501 VQ 502


>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 31  RRLLADAGLLYDQ-LKDAWLDQQLTGLEKQLSALSVSAKEDDIKELLE 171
           +RL+ +A L Y + + D+W  +      K++  + V  +E DIKE+ E
Sbjct: 186 KRLVLEAMLKYPEFIPDSWGGESAILKWKEMKEIDVRRREADIKEMAE 233


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +2

Query: 194 PPKNLKDPNRYSRGLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHK 355
           PP+NL++ +   R   +    D + S S S++ SP+     ++++++  G+S +
Sbjct: 506 PPENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSR 559


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = +2

Query: 194 PPKNLKDPNRYSRGLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHK 355
           PP+NL++ +   R   +    D + S S S++ SP+     ++++++  G+S +
Sbjct: 506 PPENLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSSNSSRSSGSSSR 559


>AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25b protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 233 GLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKVVSPTVVES 382
           G Q+  T     +T+ +++SSP    + T   + + GAS    + TVV++
Sbjct: 248 GGQENMTTSTTTTTTTTKSSSPNSLSTTTTTTSHNPGASATTTTTTVVKT 297


>AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25a protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 233 GLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKVVSPTVVES 382
           G Q+  T     +T+ +++SSP    + T   + + GAS    + TVV++
Sbjct: 565 GGQENMTTSTTTTTTTTKSSSPNSLSTTTTTTSHNPGASATTTTTTVVKT 614


>Z69634-9|CAO82013.1|  575|Caenorhabditis elegans Hypothetical
           protein B0001.3b protein.
          Length = 575

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 188 LIPPKNL-KDPNRYSRGLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKVV 361
           L+ P NL ++PNRY        +   +   + ++ S P   P   N ++    A   VV
Sbjct: 318 LLVPANLHREPNRYENRSASPHSTSGQFPGTSTRRSDPYDPPRSRNSSSISNRARSNVV 376


>Z69634-8|CAA93452.4|  591|Caenorhabditis elegans Hypothetical
           protein B0001.3a protein.
          Length = 591

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 188 LIPPKNL-KDPNRYSRGLQQLQTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKVV 361
           L+ P NL ++PNRY        +   +   + ++ S P   P   N ++    A   VV
Sbjct: 334 LLVPANLHREPNRYENRSASPHSTSGQFPGTSTRRSDPYDPPRSRNSSSISNRARSNVV 392


>L14331-8|AAA28100.1|  586|Caenorhabditis elegans C.elegans homeobox
           protein 26 protein.
          Length = 586

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 269 STSESQNSSPQYSPSKTNDAAQDGGASHKVVSPTVVESAT 388
           STS S NSS   S S TN        S K  +  + E+ T
Sbjct: 73  STSVSSNSSSSSSTSNTNSTPSSSSTSSKKSTEGMTETET 112


>AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical
           protein Y66D12A.15 protein.
          Length = 789

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 52  GLLYDQLKDAWLDQQLTGLEKQLSALSVSAKEDDIKELL 168
           G+  + LK A  + QL  L++ L+     A+E+D+KE L
Sbjct: 707 GMELEDLKLASKESQLQLLQQVLATSDADAEEEDVKEEL 745


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 236 LQQLQTVDAEVSTSESQNSSPQY-SPSKTNDAAQDGGASHKVVSPTVVESA 385
           ++ L+T+D   STS S  +SP+Y SP   +++  +  AS +  SP   E A
Sbjct: 36  MKTLETLDDGGSTS-SHQTSPEYPSPPPPSNSPPESMASLQAESPIEDEDA 85


>Z74030-10|CAA98439.1|  317|Caenorhabditis elegans Hypothetical
           protein D1054.11 protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 248 QTVDAEVSTSESQNSSPQYSPSKTNDAAQDGGASHKVVSPTVVESAT 388
           +T  AE +T+E+  +    + +   DAA   GA  K  +    ESAT
Sbjct: 240 ETPAAESTTTEASATDAAATEASATDAAATEGAVTKAAAGVTEESAT 286


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 236 LQQLQTVDAEVSTSESQNSSPQY-SPSKTNDAAQDGGASHKVVSPTVVESA 385
           ++ L+T+D   STS S  +SP+Y SP   +++  +  AS +  SP   E A
Sbjct: 36  MKTLETLDDGGSTS-SHQTSPEYPSPPPPSNSPPESMASLQAESPIEDEDA 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,537,500
Number of Sequences: 27780
Number of extensions: 137412
Number of successful extensions: 587
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)