Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N13
(397 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 24 0.73
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.3
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 1.7
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 1.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 2.9
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 22 2.9
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 3.9
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 5.1
AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone este... 21 6.8
AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein. 21 6.8
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 23.8 bits (49), Expect = 0.73
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 188 LIPPKNLKDPNRYSRGL-QQLQTVDAEVSTSESQNSSPQYSPS 313
L PP NL D + YSR + L T + Q +YSPS
Sbjct: 320 LPPPPNL-DYHDYSRQFPRDLTTQTVSTTADVLQEEEEEYSPS 361
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 288 IVHHNTHPARLMMPHKTXGLVTKWYPQL 371
I HH T P R +MP L +W P L
Sbjct: 280 IFHHRT-PDRYVMPSWIKMLFLQWLPCL 306
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 288 IVHHNTHPARLMMPHKTXGLVTKWYPQL 371
I HH T P R +MP L +W P L
Sbjct: 280 IFHHRT-PDRYVMPSWIKMLFLQWLPCL 306
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 288 IVHHNTHPARLMMPHKTXGLVTKWYPQL 371
I HH T P R +MP L +W P L
Sbjct: 280 IFHHRT-PDRYVMPSWIKMLFLQWLPCL 306
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 288 IVHHNTHPARLMMPHKTXGLVTKWYPQL 371
I HH T P R +MP L +W P L
Sbjct: 280 IFHHRT-PDRYVMPSWIKMLFLQWLPCL 306
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 288 IVHHNTHPARLMMPHKTXGLVTKWYPQL 371
I HH T P R +MP L +W P L
Sbjct: 280 IFHHRT-PDRYVMPSWIKMLFLQWLPCL 306
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 1.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 288 IVHHNTHPARLMMPHKTXGLVTKWYPQL 371
I HH T P R +MP L +W P L
Sbjct: 280 IFHHRT-PDRYVMPSWIKMLFLQWLPCL 306
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 266 VSTSESQNSSPQYSPSKTNDAAQDGGA 346
V E+ +S+P Y+ S + ++GGA
Sbjct: 1044 VGYRETSSSNPSYNFSSVSGDGEEGGA 1070
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.6 bits (46), Expect = 1.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 266 VSTSESQNSSPQYSPSKTNDAAQDGGA 346
V E+ +S+P Y+ S + ++GGA
Sbjct: 1040 VGYRETSSSNPSYNFSSVSGDGEEGGA 1066
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 2.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 294 HHNTHPARLMMPHKTXGLVTKWYPQL 371
HH T P R +MP L +W P L
Sbjct: 350 HHRT-PDRYVMPSWIKMLFLQWLPCL 374
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 2.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 294 HHNTHPARLMMPHKTXGLVTKWYPQL 371
HH T P R +MP L +W P L
Sbjct: 350 HHRT-PDRYVMPSWIKMLFLQWLPCL 374
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 21.8 bits (44), Expect = 2.9
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 245 LQTVDAEVSTSESQNSSPQYSPSKTN---DAAQDGGASHKVVSPTVVES 382
L TV E + S + Q + N D+ DG AS V+ VVE+
Sbjct: 459 LATVVEEAACRFSAVAQAQLGGERQNGRKDSGYDGAASTAVIHEPVVET 507
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.4 bits (43), Expect = 3.9
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2
Query: 215 PNRYSRGLQQLQTV 256
PN Y+RG+Q+L+ +
Sbjct: 75 PNVYNRGVQRLEAM 88
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.0 bits (42), Expect = 5.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 55 LLYDQLKDAWLDQQLTGLEKQL 120
L+ DQL +LD ++ G E +L
Sbjct: 1039 LVNDQLGQLYLDLEVEGFETKL 1060
>AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone
esterase protein.
Length = 567
Score = 20.6 bits (41), Expect = 6.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 216 GSFRFFGGIKMTVEYL 169
G+F+F GI M +YL
Sbjct: 131 GAFQFGSGIPMGAKYL 146
>AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein.
Length = 567
Score = 20.6 bits (41), Expect = 6.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 216 GSFRFFGGIKMTVEYL 169
G+F+F GI M +YL
Sbjct: 131 GAFQFGSGIPMGAKYL 146
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,485
Number of Sequences: 438
Number of extensions: 1731
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9761793
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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