Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N12
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 214 3e-56
11_01_0155 - 1287003-1287452 214 3e-56
03_06_0097 - 31632238-31632525,31633386-31633769 43 2e-04
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 38 0.007
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 30 1.3
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 29 1.8
11_01_0523 - 4109070-4109984,4110532-4110936 28 5.4
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 5.4
01_03_0227 + 13967966-13968559 28 5.4
03_05_0077 - 20547070-20547108,20547407-20547697 27 7.2
07_03_1306 - 25643469-25643609,25644008-25644169,25644496-256446... 27 9.5
>12_01_0152 - 1168928-1169377
Length = 149
Score = 214 bits (523), Expect = 3e-56
Identities = 95/143 (66%), Positives = 119/143 (83%)
Frame = +1
Query: 31 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 210
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 211 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 390
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 391 PRRCEPKKFGGPGARARYQKSYR 459
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>11_01_0155 - 1287003-1287452
Length = 149
Score = 214 bits (523), Expect = 3e-56
Identities = 95/143 (66%), Positives = 119/143 (83%)
Frame = +1
Query: 31 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 210
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 211 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 390
+D+R+ V+GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVAD
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126
Query: 391 PRRCEPKKFGGPGARARYQKSYR 459
PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 42.7 bits (96), Expect = 2e-04
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Frame = +1
Query: 43 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 213
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 214 GVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 393
D+ V V GGG Q AI +++AL+ + A+K ++ LL D
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201
Query: 394 RRCEPKKFGGPGARARYQKSYR 459
R E KK G AR R Q S R
Sbjct: 202 RIVERKKAGLKKARKRPQFSKR 223
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 37.5 bits (83), Expect = 0.007
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +1
Query: 61 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 240
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 241 GGGHVAQVYAIRQAISKAL 297
GGG QV AIR IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 255 CTGLCNQTSHL*SPYRFLPEICRRSI*EGDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRP 434
CTG+ Q S S Y F +I + + G+ + S K R +++R ++ + RRP
Sbjct: 725 CTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNIRTKKRYFLRRP 784
Query: 435 CQIP 446
++P
Sbjct: 785 VRLP 788
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 78 NCGSILQTRTWSVACKWTPPRPGRTQTSS 164
+C S +Q R+ SV W PP G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 241 GGGHVAQVYAIRQAISKALIAFY 309
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 124 NGRPLDLVEPRLLQYKLQEPILLL 195
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_03_0227 + 13967966-13968559
Length = 197
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 411 EIRWSRRPCQIPEILPLISF 470
E RW+RRP Q+P + +SF
Sbjct: 71 EQRWTRRPTQVPPPITAVSF 90
>03_05_0077 - 20547070-20547108,20547407-20547697
Length = 109
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 339 GDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRPCQ 440
GDQR S + +GR L E W+RR C+
Sbjct: 4 GDQRGDSPSSHELSGRLEGILADGEAPWARRACK 37
>07_03_1306 -
25643469-25643609,25644008-25644169,25644496-25644659,
25645117-25645192,25645569-25645651,25646393-25646669
Length = 300
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 7 GAAVQEARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLD 141
GAA + A EP +V VFG AVA R G R+ G L+
Sbjct: 95 GAAWKVAAVEPGSSVAVFGLGAVGLAVAQGARMRGAKRIIGVDLN 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,782,187
Number of Sequences: 37544
Number of extensions: 369928
Number of successful extensions: 1026
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -