Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N11
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   3.5  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   4.7  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   6.2  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    25   6.2  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   6.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   6.2  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.1  

>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 143 IIQKIREELANLDQSEEVEQITKHF 217
           ++  + E++  L QSE VE I +HF
Sbjct: 4   VLNALEEKVVELQQSESVEVIKRHF 28


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 207 LNTSTTRCSISRTVSNVPTPTVWATTDSYCPSV-GDR 314
           LNTS +R  +S + +N P+P +  +  S  P   GD+
Sbjct: 154 LNTSASRIGLSSSPTNTPSPNLPVSQPSASPHYSGDK 190


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 469 ELGKNMEHHKKNTPNTPFLPGNEFQNFRE 555
           +LGK     + +TP +P L  +EF   RE
Sbjct: 147 KLGKEDNRSRSSTPASPSLESHEFSESRE 175


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 140 AIIQKIREELANLDQSEEVEQITKHFHNTLQH 235
           A+  KIRE   NL  ++  E+  KH  +T++H
Sbjct: 110 AVEAKIREAAKNLMVAQAKEKKGKHKQSTIEH 141


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 116 TLTVNLIDAIIQKIREELANLDQSEEVEQITKHFHNTLQHLKNRIE 253
           T  V+L+D  ++ ++  LAN +QS       K    TL+ L+N+ E
Sbjct: 24  TAEVDLLDEKLRVLQLLLANCEQSRNENLQEKEHGLTLEDLENQEE 69


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 481 NMEHHKKNTPNTPFLPGNEFQNFRELHSFII 573
           N E+  +N  N+ F PG +  +FR L   +I
Sbjct: 131 NTENGLENCANSRFAPGGDIDSFRVLSQKLI 161


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = +2

Query: 110  NSTLTVNLIDAIIQKIREELANLDQSEEVEQITKHFHN 223
            N+T     +++  + ++E  A +D  +E+E ++ +FH+
Sbjct: 1410 NATAPYAALESDYRVLQEIYAGIDDPDEIEAVSLNFHD 1447


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 412 LSTKSPTPLLNRCKRGII*AVFLLSI 335
           +S +  + LLNRC    I AVFLLS+
Sbjct: 415 ISEQLISSLLNRCTLSSIQAVFLLSL 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,171
Number of Sequences: 5004
Number of extensions: 47568
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)