Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_N11
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419     29   2.7  
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926...    29   2.7  
05_05_0384 - 24557190-24557393,24557481-24557597,24557712-24558440     28   6.3  
05_02_0116 + 6773659-6774437,6775103-6775298,6775381-6775565,677...    28   6.3  
02_02_0637 - 12491706-12492575,12492580-12492657                       28   6.3  
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256...    27   8.3  

>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
          Length = 396

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/61 (22%), Positives = 22/61 (36%)
 Frame = -3

Query: 213 CLVICSTSSDWSRFANSSRIFCIIASMRLTVRVELPLSRNRAYRPSSSPSSWACTLPSIH 34
           C  +C+  SD        R    + ++    + E       A  P+  PS W C+L    
Sbjct: 242 CQAVCTCESDLQNHLRGRRHQLKVQALPEAAKQEKNNPPKLAKNPNKQPSEWVCSLCQAK 301

Query: 33  C 31
           C
Sbjct: 302 C 302


>01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,
            9269645-9269808,9269892-9269972,9270783-9270962,
            9271489-9271929,9273234-9273344,9274355-9274463,
            9274618-9274643,9274823-9274903,9275013-9275211,
            9275374-9275449,9275553-9275769,9276117-9276155,
            9276684-9276783,9276962-9277084,9277171-9277895
          Length = 1059

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 301  LGQYESVVAQTVGVGTFDTVLEMLQRVV 218
            +G YE  +  T+GVGT  TV+ ML+ V+
Sbjct: 920  MGCYEVSLGDTIGVGTPGTVVPMLEAVM 947


>05_05_0384 - 24557190-24557393,24557481-24557597,24557712-24558440
          Length = 349

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 141 ASMRLTVRVELPLSR-NRAYRPSSSPSSWACTLPSIHCC 28
           A   L +  E P S+ N  +RP+SS SS +C LP+ H C
Sbjct: 201 AGQLLPLAPEHPSSQSNTIWRPASSSSSSSC-LPATHRC 238


>05_02_0116 +
           6773659-6774437,6775103-6775298,6775381-6775565,
           6775746-6776079,6776174-6776378,6776692-6776834,
           6777081-6777233
          Length = 664

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 48  ACRPNCSASCSADMLCCG 101
           A + +CS+SCS DM+ CG
Sbjct: 350 ASKLDCSSSCSQDMMFCG 367


>02_02_0637 - 12491706-12492575,12492580-12492657
          Length = 315

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 27  HNSVWTGACRPNCSASCSADMLCCGREATLPS 122
           +N +    CR  CSAS  A    CG E + P+
Sbjct: 77  YNLLLCSTCRAGCSASPPASSWICGTEGSPPT 108


>01_01_0316 +
           2565704-2566134,2566682-2566845,2566989-2567152,
           2567594-2567720,2568347-2568450
          Length = 329

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 454 GSKG-GELGKNMEHHKKNTPNTPFLPGNEFQNFRELHSFII 573
           GS G G  G +  HH ++ P  P  P +EF+ FR    F++
Sbjct: 36  GSHGPGHYGNH--HHHRSRPPPPPPPPSEFRPFRRWFPFLV 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,780,742
Number of Sequences: 37544
Number of extensions: 304267
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)