Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_N10
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 150 8e-37
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 150 8e-37
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 124 4e-29
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 36 0.026
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 35 0.059
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 2.2
01_01_0437 - 3293624-3294029,3294094-3294212 29 3.0
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 6.8
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 9.0
04_04_0620 + 26656072-26656417,26656585-26657396 27 9.0
02_04_0134 - 20109610-20109984 27 9.0
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 150 bits (364), Expect = 8e-37
Identities = 75/141 (53%), Positives = 93/141 (65%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 359 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 538
A LFK+L KYRPE K+P ++ G N VT L+E+
Sbjct: 84 LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 142
Query: 539 KAQLVVIAHDVDPIELVLFLP 601
KAQLVVIAHDVDPIELV++LP
Sbjct: 143 KAQLVVIAHDVDPIELVVWLP 163
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 150 bits (364), Expect = 8e-37
Identities = 75/141 (53%), Positives = 93/141 (65%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 359 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 538
A LFK+L KYRPE K+P ++ G N VT L+E+
Sbjct: 68 LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 126
Query: 539 KAQLVVIAHDVDPIELVLFLP 601
KAQLVVIAHDVDPIELV++LP
Sbjct: 127 KAQLVVIAHDVDPIELVVWLP 147
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 124 bits (300), Expect = 4e-29
Identities = 68/141 (48%), Positives = 89/141 (63%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 359 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 538
++L++ + E K+P ++ G + VT L+E+
Sbjct: 85 LGCQKERLLKRAQAEAEGKTVEA-----------------KKPIVVKYGLDHVTYLIEQS 127
Query: 539 KAQLVVIAHDVDPIELVLFLP 601
KAQLVVIAHDVDPIELV++LP
Sbjct: 128 KAQLVVIAHDVDPIELVVWLP 148
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 35.9 bits (79), Expect = 0.026
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 494 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 601
L+ G N TK + + A+ VV+A D +P+E++L LP
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLP 68
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 34.7 bits (76), Expect = 0.059
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 494 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLP 601
L+ G N TK + + ++ VV+A D +P+E++L LP
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLP 70
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 200 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 367
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 368 GLFKILEK 391
+L+K
Sbjct: 412 AAKDVLQK 419
>01_01_0437 - 3293624-3294029,3294094-3294212
Length = 174
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 470 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 574
PPP + R GT+++ + KA++ VI HD +
Sbjct: 34 PPPPQQQAARKGTHSLEGVKPLPKAEVSVICHDAN 68
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 300 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 425
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 223 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 330
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 467 EPPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDP 577
+PP P + A + +VE KKAQ++ + H +DP
Sbjct: 344 QPPRPPPMSFVAEHPFMFAIVEYKKAQVLFLGHVMDP 380
>02_04_0134 - 20109610-20109984
Length = 124
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 424 ASKESRRSQGC*ER*AATEKAKHPTRWNQHCYQAC*EEEGTACGHRS*RRP 576
A+ + R Q C E+ AA + + RW + C C + + C RRP
Sbjct: 15 AASRAERRQACSEQGAAKQARRLERRWAKQC--GCRQPQSEWCVANQCRRP 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,671,407
Number of Sequences: 37544
Number of extensions: 292052
Number of successful extensions: 789
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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